Os01g0896800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eukaryotic ribosomal protein L5 family protein.
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Os01g0896800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eukaryotic ribosomal protein L5 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.05 | 0.37 | 14.1 | 0.767 | 0.837 | 0.396 | 0.65 | -1.2 | 0.316 | 18.7 | 19.96 | 1294 | -- | -- |
| 65.53 | 0.377 | 14.1 | 0.766 | 0.837 | 0.394 | 0.655 | -- | 0.315 | 18.7 | 19.98 | 1292 | -- | -- |
| 63.1 | 0.37 | 14.1 | 0.759 | 0.84 | 0.397 | -- | -1.27 | 0.317 | 18.8 | 19.97 | 1292 | -- | -- |
| 66.82 | 0.381 | 14.1 | 0.745 | 0.847 | 0.371 | -- | -- | 0.302 | 18.7 | 19.22 | 1292 | -- | -- |
| 98.95 | 0.463 | 14.1 | 0.789 | -- | 0.403 | -- | -1.22 | 0.325 | -- | 19.98 | 1390 | -- | -- |
| 69.76 | 0.392 | 14.1 | 0.643 | 0.811 | -- | 0.779 | -- | 0.202 | 18.4 | -- | -- | -- | -- |
| 71.27 | 0.395 | 14.1 | 0.633 | 0.814 | -- | -- | -- | 0.205 | 18.4 | -- | -- | -- | -- |
| 102.46 | 0.471 | 14.1 | 0.787 | -- | 0.405 | -- | -- | 0.325 | -- | 13.33 | 1429 | -- | -- |
| 69.55 | 0.388 | 14.1 | -- | 0.753 | 0.716 | -- | -- | 0.227 | 18.9 | 80 | 1305 | -- | -- |
| 105.71 | 0.48 | 14.1 | 0.612 | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
| 81.83 | 0.423 | 14.1 | -- | 0.806 | -- | -- | -- | 0.134 | 18.5 | -- | -- | -- | -- |
| 96.89 | 0.458 | 14.1 | -- | -- | 0.935 | -- | -- | 0.0423 | -- | 70 | 6955 | -- | -- |
| 115.6 | 0.502 | 14.1 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.38 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 2 | 58.63 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 4 | 58.75 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 7 | 59.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 8 | 59.26 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 9 | 59.33 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 14 | 59.46 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 16 | 59.58 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 7 |
| 17 | 59.59 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 34 | 60.14 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 36 | 60.18 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 51 | 60.45 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 57 | 60.51 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 59 | 60.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 60 | 60.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 61 | 60.54 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 70 | 60.59 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 76 | 60.67 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 81 | 60.70 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 24 | 9 |
| 91 | 60.79 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 98 | 60.83 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 107 | 60.90 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 116 | 60.93 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 182 | 61.27 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 206 | 61.40 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 210 | 61.41 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 215 | 61.42 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 227 | 61.46 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 248 | 61.54 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 262 | 61.58 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 288 | 61.67 | wind | 5 | 270 | < th | dose independent | rect. | 4 | 1 |
| 335 | 61.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 358 | 61.84 | wind | 5 | 90 | < th | dose independent | rect. | 3 | 5 |
| 362 | 61.84 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 407 | 61.93 | radiation | 10 | 1440 | < th | dose independent | sin | 18 | NA |
| 411 | 61.93 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 428 | 61.98 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 436 | 62.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 448 | 62.02 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 3 | 5 |
| 469 | 62.08 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 470 | 62.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 481 | 62.10 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 484 | 62.10 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 494 | 62.12 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 502 | 62.12 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 517 | 62.13 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 522 | 62.14 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 566 | 62.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 568 | 62.21 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 3 | 6 |
| 582 | 62.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 602 | 62.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 641 | 62.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 642 | 62.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 650 | 62.31 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 3 | 3 |
| 657 | 62.31 | temperature | 20 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 692 | 62.35 | radiation | 20 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 694 | 62.35 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 704 | 62.36 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 752 | 62.39 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 834 | 62.45 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 835 | 62.45 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 854 | 62.47 | humidity | 50 | 90 | > th | dose independent | rect. | 8 | 6 |
| 878 | 62.50 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 879 | 62.50 | humidity | 50 | 10 | > th | dose independent | rect. | 9 | 5 |
| 907 | 62.51 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 944 | 62.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 953 | 62.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 980 | 62.59 | wind | 1 | 270 | > th | dose independent | rect. | 3 | 2 |
| 998 | 62.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 3 |