Os01g0896400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0896400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.82 | 0.381 | 3 | -1.12 | 0.201 | 0.747 | -0.0193 | -5.37 | 0.227 | 7.69 | 30.74 | 5643 | -- | -- |
| 69.19 | 0.387 | 2.88 | -0.0576 | 0.251 | 0.128 | -0.158 | -- | 0.254 | 7.49 | 26.7 | 1562 | -- | -- |
| 65.81 | 0.378 | 3 | -1.11 | 0.198 | 0.749 | -- | -5.34 | 0.226 | 7.72 | 30.9 | 5641 | -- | -- |
| 68.69 | 0.386 | 2.88 | -0.111 | 0.23 | 0.178 | -- | -- | 0.245 | 7.53 | 26.17 | 5846 | -- | -- |
| 67.98 | 0.384 | 3.01 | -1.14 | -- | 0.769 | -- | -5.53 | 0.236 | -- | 30.87 | 5643 | -- | -- |
| 69.76 | 0.392 | 2.88 | -0.0236 | 0.239 | -- | -0.151 | -- | 0.259 | 7.63 | -- | -- | -- | -- |
| 69.83 | 0.391 | 2.88 | -0.0273 | 0.238 | -- | -- | -- | 0.259 | 7.67 | -- | -- | -- | -- |
| 70.7 | 0.392 | 2.88 | -0.0863 | -- | 0.207 | -- | -- | 0.242 | -- | 34.01 | 6995 | -- | -- |
| 68.12 | 0.384 | 2.88 | -- | 0.241 | 0.159 | -- | -- | 0.257 | 7.97 | 34 | 6956 | -- | -- |
| 72.89 | 0.399 | 2.89 | -0.0241 | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
| 69.85 | 0.391 | 2.88 | -- | 0.238 | -- | -- | -- | 0.263 | 7.68 | -- | -- | -- | -- |
| 70.65 | 0.391 | 2.89 | -- | -- | 0.189 | -- | -- | 0.271 | -- | 34 | 6958 | -- | -- |
| 72.9 | 0.399 | 2.89 | -- | -- | -- | -- | -- | 0.266 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.90 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 4 | 60.90 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 5 | 60.90 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 8 | 60.90 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 9 | 60.90 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 12 | 60.90 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 13 | 60.92 | wind | 3.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 14 | 60.95 | wind | 1.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 16 | 60.98 | radiation | 10.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 17 | 61.00 | temperature | 25.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 19 | 61.01 | humidity | 80.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 20 | 61.01 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 25 | 61.04 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 26 | 61.05 | humidity | 70.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 27 | 61.05 | radiation | 40.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 29 | 61.07 | wind | 5.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 33 | 61.08 | temperature | 10.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 36 | 61.08 | temperature | 30.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 37 | 61.08 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 39 | 61.08 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 1 |
| 41 | 61.08 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 8 | 1 |
| 44 | 61.08 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 1 |
| 45 | 61.08 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 46 | 61.08 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 49 | 61.12 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 50 | 61.12 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 51 | 61.13 | wind | 9.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 53 | 61.16 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 8 | 1 |
| 68 | 61.36 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 80 | 61.67 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 8 | 1 |
| 101 | 61.82 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 112 | 62.18 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 23 |
| 114 | 62.18 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 125 | 62.67 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 129 | 62.91 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 23 |
| 134 | 63.69 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 147 | 63.70 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 155 | 63.84 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 176 | 64.09 | temperature | 30.0 | 30 | < th | dose independent | rect. | 9 | 23 |
| 215 | 64.94 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 275 | 65.53 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 17 | 16 |
| 276 | 65.54 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 6 | 3 |
| 311 | 65.74 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 23 |
| 354 | 66.08 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 8 |
| 376 | 66.27 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 7 |
| 385 | 66.31 | radiation | 10.0 | 30 | > th | dose independent | sin | 10 | NA |
| 628 | 67.12 | humidity | 80.0 | 10 | < th | dose independent | rect. | 20 | 13 |
| 650 | 67.18 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 667 | 67.21 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 672 | 67.23 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 673 | 67.23 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 678 | 67.24 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 679 | 67.24 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 687 | 67.25 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 689 | 67.25 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 690 | 67.25 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 693 | 67.25 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 699 | 67.26 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 702 | 67.26 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 705 | 67.26 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 706 | 67.26 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 708 | 67.26 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 713 | 67.26 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 715 | 67.26 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 716 | 67.26 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 718 | 67.26 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 723 | 67.26 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 776 | 67.33 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 792 | 67.38 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 817 | 67.44 | temperature | 25.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 839 | 67.47 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 842 | 67.48 | wind | 3.0 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 851 | 67.50 | wind | 3.0 | 720 | < th | dose independent | rect. | 21 | 1 |
| 896 | 67.57 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 993 | 67.72 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 12 | 1 |