Os01g0896300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0896300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 414.36 | 0.956 | 3.58 | 0.0668 | 0.78 | 1.67 | 0.119 | -0.508 | -0.226 | 16.5 | 66.35 | 818 | 18.8 | 3.58 |
| 414.85 | 0.949 | 3.58 | 0.0235 | 0.808 | 1.67 | 0.283 | -- | -0.233 | 16.4 | 65.6 | 823 | 18.8 | 3.48 |
| 414.32 | 0.948 | 3.57 | 0.0699 | 0.763 | 1.66 | -- | -0.578 | -0.235 | 16.5 | 66.87 | 818 | 18.8 | 3.57 |
| 415.43 | 0.949 | 3.58 | 0.0495 | 0.795 | 1.66 | -- | -- | -0.231 | 16.5 | 65.74 | 823 | 18.8 | 3.45 |
| 425.02 | 0.96 | 3.56 | -0.127 | -- | 1.75 | -- | -0.727 | -0.0828 | -- | 72.83 | 2225 | 19 | 3.42 |
| 456.84 | 1 | 3.56 | 0.111 | 0.503 | -- | -0.207 | -- | -0.184 | 0.938 | -- | -- | -- | -- |
| 457.01 | 1 | 3.56 | 0.119 | 0.503 | -- | -- | -- | -0.183 | 0.862 | -- | -- | -- | -- |
| 425.52 | 0.961 | 3.54 | -0.103 | -- | 1.54 | -- | -- | -0.123 | -- | 72.72 | 2217 | 19.1 | 3.66 |
| 415.47 | 0.949 | 3.58 | -- | 0.781 | 1.67 | -- | -- | -0.233 | 16.5 | 65.91 | 824 | 18.8 | 3.42 |
| 472.78 | 1.02 | 3.55 | 0.137 | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
| 457.38 | 1 | 3.56 | -- | 0.505 | -- | -- | -- | -0.196 | 0.873 | -- | -- | -- | -- |
| 425.66 | 0.961 | 3.54 | -- | -- | 1.52 | -- | -- | -0.101 | -- | 72.59 | 2217 | 19.1 | 3.4 |
| 473.28 | 1.02 | 3.56 | -- | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 418.48 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 11 | 6 |
| 2 | 419.48 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 6 | 420.67 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 14 | 421.74 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 17 | 421.74 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 34 | 423.37 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 62 | 424.73 | humidity | 90.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 88 | 425.71 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 90 | 425.71 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 114 | 426.05 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 134 | 426.47 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 195 | 427.51 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 206 | 427.65 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 13 | 13 |
| 240 | 428.11 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 13 | 2 |
| 257 | 428.30 | temperature | 15.0 | 4320 | > th | dose independent | sin | 22 | NA |
| 258 | 428.32 | temperature | 15.0 | 4320 | < th | dose independent | sin | 22 | NA |
| 290 | 428.79 | humidity | 90.0 | 4320 | < th | dose independent | sin | 17 | NA |
| 322 | 429.14 | wind | 3.0 | 720 | > th | dose independent | rect. | 17 | 5 |
| 329 | 429.18 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 385 | 429.80 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 386 | 429.81 | humidity | 80.0 | 720 | < th | dose independent | rect. | 18 | 5 |
| 407 | 429.88 | wind | 3.0 | 720 | < th | dose independent | rect. | 16 | 8 |
| 420 | 429.97 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 519 | 430.67 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 13 |
| 549 | 430.81 | wind | 3.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 552 | 430.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 16 | 11 |
| 568 | 430.89 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 14 | 11 |
| 670 | 431.34 | humidity | 80.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 697 | 431.43 | wind | 7.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 718 | 431.48 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 769 | 431.64 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 14 | 7 |
| 789 | 431.69 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 818 | 431.78 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 819 | 431.78 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 830 | 431.81 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 21 | NA |
| 839 | 431.83 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 840 | 431.83 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 871 | 431.92 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 15 | 5 |
| 878 | 431.94 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 903 | 431.99 | humidity | 70.0 | 4320 | > th | dose dependent | sin | 16 | NA |
| 948 | 432.10 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 13 | 17 |