Os01g0896200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0896200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 462.66 | 1.01 | 8.95 | -3.79 | 0.439 | -2 | 3.5 | -2.04 | -0.956 | 8.03 | 20 | 3907 | -- | -- |
| 468.31 | 1.01 | 8.88 | -3.64 | 0.437 | -1.42 | 3.52 | -- | -0.902 | 8.18 | 20.83 | 3636 | -- | -- |
| 498.7 | 1.04 | 8.96 | -3.71 | 0.437 | -2.07 | -- | -2.21 | -0.957 | 7.41 | 20 | 3810 | -- | -- |
| 502.88 | 1.04 | 8.88 | -3.52 | 0.429 | -1.47 | -- | -- | -0.896 | 7.4 | 20.6 | 2708 | -- | -- |
| 508.37 | 1.05 | 8.97 | -3.72 | -- | -2.07 | -- | -2.23 | -0.954 | -- | 20 | 3655 | -- | -- |
| 514.36 | 1.06 | 8.97 | -4.46 | 0.468 | -- | 3.59 | -- | -1.32 | 8.21 | -- | -- | -- | -- |
| 553.83 | 1.1 | 8.97 | -4.36 | 0.464 | -- | -- | -- | -1.32 | 8.14 | -- | -- | -- | -- |
| 513.85 | 1.06 | 8.9 | -3.6 | -- | -1.53 | -- | -- | -0.928 | -- | 20.5 | 2320 | -- | -- |
| 588.18 | 1.13 | 8.7 | -- | 0.487 | -3.43 | -- | -- | -0.0669 | 9.34 | 18.1 | 47520 | -- | -- |
| 565.67 | 1.11 | 8.99 | -4.35 | -- | -- | -- | -- | -1.31 | -- | -- | -- | -- | -- |
| 1053.93 | 1.52 | 8.87 | -- | 0.447 | -- | -- | -- | -0.835 | 8.85 | -- | -- | -- | -- |
| 594.94 | 1.14 | 8.69 | -- | -- | -3.44 | -- | -- | -0.00866 | -- | 18.46 | 47520 | -- | -- |
| 1065.32 | 1.52 | 8.88 | -- | -- | -- | -- | -- | -0.832 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 446.99 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 2 | 448.74 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 11 | 457.15 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 13 | 458.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 15 | 458.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 13 |
| 20 | 459.08 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 28 | 459.52 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 30 | 459.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 13 |
| 34 | 459.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 112 | 462.18 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 18 |
| 121 | 462.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 128 | 462.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 247 | 465.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 21 |
| 257 | 466.00 | wind | 1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 258 | 466.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 21 |
| 308 | 466.50 | wind | 3 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 316 | 466.63 | wind | 1 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 322 | 466.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 325 | 466.68 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 347 | 466.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 354 | 466.83 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 374 | 466.91 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 385 | 467.00 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 393 | 467.05 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 408 | 467.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 445 | 467.32 | temperature | 20 | 4320 | < th | dose dependent | rect. | 16 | 8 |
| 472 | 467.50 | wind | 1 | 14400 | < th | dose dependent | rect. | 14 | 18 |
| 484 | 467.55 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 500 | 467.70 | wind | 1 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 503 | 467.71 | wind | 1 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 516 | 467.83 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 538 | 468.02 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 550 | 468.11 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 568 | 468.26 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 573 | 468.29 | temperature | 20 | 4320 | < th | dose dependent | sin | 18 | NA |
| 576 | 468.33 | wind | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 581 | 468.42 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 583 | 468.43 | wind | 3 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 584 | 468.43 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 676 | 469.41 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 705 | 469.66 | wind | 1 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 725 | 469.84 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 761 | 470.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 767 | 470.29 | wind | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 788 | 470.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 801 | 470.60 | wind | 1 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 822 | 470.74 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 840 | 470.81 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 15 |
| 853 | 470.92 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 883 | 471.12 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 17 |
| 900 | 471.21 | wind | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 922 | 471.38 | wind | 3 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 943 | 471.52 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 19 |