Os01g0895600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calreticulin 3 (Fragment).
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Os01g0895600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calreticulin 3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.61 | 0.317 | 13.7 | 0.0796 | 1.06 | -0.571 | -0.563 | -2.66 | 0.243 | 16.8 | 9.916 | 4035 | -- | -- |
| 50.56 | 0.331 | 13.7 | 0.00521 | 1.06 | -0.381 | -0.679 | -- | 0.237 | 16.8 | 21.55 | 12444 | -- | -- |
| 46.3 | 0.317 | 13.7 | 0.0816 | 1.06 | -0.571 | -- | -2.61 | 0.242 | 16.8 | 9.418 | 4041 | -- | -- |
| 50.8 | 0.332 | 13.7 | -0.0106 | 1.05 | -0.359 | -- | -- | 0.237 | 17 | 20.17 | 12396 | -- | -- |
| 69.23 | 0.388 | 13.7 | 0.411 | -- | -1.32 | -- | -1.59 | 0.212 | -- | 1.609 | 4982 | -- | -- |
| 54.62 | 0.346 | 13.7 | -0.0538 | 1.08 | -- | -0.499 | -- | 0.332 | 17.1 | -- | -- | -- | -- |
| 55.24 | 0.348 | 13.7 | -0.0544 | 1.07 | -- | -- | -- | 0.329 | 17.2 | -- | -- | -- | -- |
| 65.79 | 0.378 | 13.7 | -0.0942 | -- | -1.27 | -- | -- | 0.198 | -- | 1.762 | 4903 | -- | -- |
| 50.78 | 0.332 | 13.7 | -- | 1.06 | -0.353 | -- | -- | 0.239 | 17.1 | 20.03 | 11092 | -- | -- |
| 115.7 | 0.503 | 13.7 | -0.0924 | -- | -- | -- | -- | 0.302 | -- | -- | -- | -- | -- |
| 55.32 | 0.348 | 13.7 | -- | 1.08 | -- | -- | -- | 0.336 | 17.1 | -- | -- | -- | -- |
| 62.88 | 0.369 | 13.7 | -- | -- | -1.59 | -- | -- | 0.12 | -- | 1.66 | 4963 | -- | -- |
| 115.93 | 0.503 | 13.7 | -- | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 2 | 44.24 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 4 | 44.51 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 9 | 44.85 | humidity | 50 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 13 | 45.14 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 14 | 45.15 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 16 | 45.19 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 17 | 45.20 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 25 | 45.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 26 | 45.30 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 27 | 45.30 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 33 | 45.36 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 46 | 45.41 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 58 | 45.44 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 73 | 45.45 | radiation | 40 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 76 | 45.46 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 91 | 45.49 | radiation | 10 | 4320 | < th | dose independent | sin | 12 | NA |
| 93 | 45.50 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 110 | 45.52 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 111 | 45.52 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 137 | 45.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 138 | 45.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 150 | 45.54 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 157 | 45.55 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 162 | 45.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 172 | 45.56 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 184 | 45.57 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 255 | 45.62 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 258 | 45.63 | radiation | 1 | 14400 | > th | dose independent | sin | 7 | NA |
| 282 | 45.64 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 16 |
| 284 | 45.65 | radiation | 1 | 14400 | < th | dose independent | sin | 7 | NA |
| 296 | 45.65 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 16 |
| 297 | 45.65 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 306 | 45.66 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 344 | 45.68 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 403 | 45.71 | radiation | 20 | 4320 | < th | dose dependent | rect. | 16 | 16 |
| 442 | 45.76 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 443 | 45.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 479 | 45.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 20 |
| 487 | 45.78 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 533 | 45.81 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 535 | 45.81 | radiation | 10 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 617 | 45.85 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 618 | 45.85 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 684 | 45.90 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 703 | 45.93 | humidity | 90 | 14400 | < th | dose independent | sin | 5 | NA |
| 705 | 45.93 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 729 | 45.95 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 745 | 45.96 | radiation | 10 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 747 | 45.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 16 |
| 760 | 45.98 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 816 | 45.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 825 | 45.99 | wind | 1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 845 | 46.01 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 909 | 46.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 937 | 46.06 | humidity | 90 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 956 | 46.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 21 |
| 957 | 46.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 23 |