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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0893300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.4 (0.0429) R2 : 0.773
β1 : -4.82 (0.188) R2dD : 0.606 R2D : 0.462
β2 : 1.07 (0.094) R2dC : 0.0656 R2C : 0.0067
β3 : 4.69 (0.351) R2dE : 0.293 R2E : 0.293
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.81 (1.16) R2dD*E : 0.112 R2D*E : -0.497
γ1 : -0.867 (0.0875) R2dN8 : 0.0743 R2N8 : 0.0128
σ : 0.717
deviance : 236.67
__
_____
C
peak time of C : 2.38
E
wheather : radiation
threshold : 0.49
memory length : 1439
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
230 0.713 4.39 -4.85 0.813 4.98 -1.8 8.39 -0.866 3.16 0.57 1471 -- --
247.23 0.732 4.26 -4.19 0.782 3.21 -1.28 -- -0.728 3.29 1.729 1482 -- --
236.67 0.717 4.4 -4.82 1.07 4.69 -- 7.81 -0.867 2.38 0.49 1439 -- --
253.45 0.741 4.25 -4.16 0.803 3.19 -- -- -0.7 3.16 1.96 1477 -- --
265.96 0.76 4.38 -4.58 -- 5.02 -- 7.07 -0.814 -- 0.4074 1510 -- --
352.14 0.88 4.36 -4.84 1.02 -- -1.6 -- -1.13 2.39 -- -- -- --
361.31 0.89 4.35 -4.79 1.02 -- -- -- -1.12 2.22 -- -- -- --
260.79 0.752 4.26 -4.16 -- 3.54 -- -- -0.719 -- 1.507 1585 -- --
641.01 1.18 4.15 -- 0.473 4.47 -- -- -0.0935 3.72 0.06993 1506 -- --
422.85 0.961 4.34 -4.75 -- -- -- -- -1.09 -- -- -- -- --
966.79 1.45 4.23 -- 0.925 -- -- -- -0.583 2.11 -- -- -- --
636.95 1.18 4.12 -- -- 5.48 -- -- -0.101 -- 0.07583 1513 -- --
1018.1 1.49 4.22 -- -- -- -- -- -0.565 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.49 radiation 1 14400 < th dose dependent rect. 24 5
2 228.48 radiation 1 1440 < th dose dependent rect. 18 23
3 228.50 radiation 1 14400 < th dose dependent rect. 22 7
9 229.86 radiation 30 43200 < th dose dependent rect. 23 6
13 230.00 radiation 20 43200 < th dose dependent rect. 19 10
29 230.51 radiation 10 43200 < th dose dependent rect. 4 1
31 230.51 radiation 1 1440 < th dose dependent rect. 20 21
32 230.55 radiation 1 1440 < th dose dependent rect. 5 12
38 230.73 radiation 1 1440 < th dose dependent rect. 24 17
50 231.52 radiation 1 1440 < th dose dependent sin 1 NA
63 233.16 radiation 1 1440 < th dose dependent rect. 11 20
64 233.21 radiation 1 43200 < th dose independent rect. 23 6
68 233.42 radiation 1 1440 < th dose dependent rect. 9 22
70 233.46 radiation 1 43200 < th dose independent rect. 19 10
77 233.88 radiation 1 43200 > th dose independent rect. 4 1
87 233.88 radiation 1 43200 > th dose dependent rect. 4 1
101 234.05 radiation 1 43200 < th dose independent rect. 4 1
124 235.35 radiation 1 1440 < th dose dependent rect. 5 20
131 235.45 radiation 1 1440 < th dose dependent rect. 5 18
143 235.67 humidity 90 43200 > th dose dependent rect. 23 1
150 235.91 radiation 1 1440 < th dose dependent rect. 24 23
157 235.96 radiation 1 1440 < th dose dependent no NA NA
191 236.14 radiation 1 43200 > th dose dependent rect. 18 1
198 236.14 radiation 40 14400 < th dose dependent rect. 18 7
225 236.99 humidity 90 43200 > th dose independent rect. 23 1
232 237.40 temperature 20 14400 > th dose independent rect. 4 1
233 237.49 radiation 20 14400 < th dose dependent rect. 18 3
236 237.55 temperature 20 14400 < th dose independent rect. 4 1
239 237.60 wind 7 43200 > th dose independent rect. 13 2
244 237.68 radiation 10 14400 < th dose dependent rect. 18 1
256 237.91 humidity 90 43200 > th dose dependent rect. 21 6
261 238.07 radiation 10 43200 < th dose independent rect. 18 13
275 238.26 wind 7 43200 < th dose independent rect. 13 1
282 238.48 radiation 20 14400 > th dose dependent rect. 16 1
324 239.03 radiation 10 43200 < th dose independent rect. 18 7
346 239.31 radiation 10 43200 < th dose independent rect. 18 3
348 239.37 wind 7 43200 > th dose dependent rect. 13 3
368 239.69 radiation 1 14400 > th dose independent rect. 8 2
372 239.78 radiation 1 14400 < th dose independent rect. 8 2
419 240.65 humidity 90 43200 > th dose independent rect. 20 7
420 240.65 radiation 1 1440 > th dose independent rect. 11 20
422 240.72 humidity 90 43200 > th dose independent rect. 21 4
438 241.24 radiation 30 43200 < th dose independent rect. 16 9
440 241.24 radiation 1 1440 < th dose independent rect. 11 20
451 241.44 radiation 1 14400 < th dose dependent rect. 9 1
453 241.52 radiation 30 43200 < th dose independent rect. 16 5
454 241.54 humidity 90 43200 < th dose independent rect. 22 3
456 241.57 radiation 30 43200 < th dose independent rect. 16 2
475 241.77 wind 1 43200 < th dose dependent rect. 18 11
526 242.71 humidity 90 43200 < th dose independent rect. 19 8
624 244.08 radiation 1 1440 < th dose dependent rect. 11 14
638 244.22 wind 1 43200 < th dose independent rect. 19 9
648 244.29 radiation 1 1440 < th dose dependent rect. 11 12
649 244.30 radiation 1 1440 > th dose independent sin 0 NA
658 244.38 radiation 1 1440 < th dose dependent rect. 11 8
687 244.69 humidity 90 43200 > th dose dependent sin 13 NA
692 244.75 radiation 40 43200 < th dose independent rect. 15 18
700 244.82 radiation 1 43200 < th dose dependent rect. 7 4
743 245.19 radiation 1 1440 < th dose independent sin 1 NA
746 245.22 radiation 1 1440 > th dose independent rect. 5 13
755 245.32 radiation 1 1440 > th dose independent rect. 17 23
782 245.56 wind 1 43200 < th dose dependent rect. 20 1
817 245.81 wind 1 43200 < th dose dependent rect. 22 6
826 245.93 radiation 1 1440 < th dose independent rect. 5 13
827 245.93 radiation 1 1440 < th dose independent rect. 17 23
853 246.11 radiation 1 1440 < th dose independent rect. 5 20
862 246.15 radiation 1 1440 < th dose independent rect. 5 18
875 246.27 radiation 1 1440 > th dose independent no NA NA
939 246.60 humidity 90 43200 > th dose independent sin 13 NA
946 246.66 humidity 80 43200 > th dose independent rect. 13 1
949 246.74 radiation 1 1440 < th dose independent rect. 20 22
965 246.81 radiation 1 1440 < th dose dependent sin 14 NA
968 246.83 radiation 1 1440 < th dose independent rect. 24 18
983 246.89 humidity 60 43200 < th dose independent rect. 10 1
994 246.96 radiation 1 1440 < th dose independent rect. 24 23