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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0892800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.41 (0.0514) R2 : 0.249
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.968 (0.182) R2dC : 0.087 R2C : -0.173
β3 : 2.35 (0.2) R2dE : 0.422 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00302 (0.108) R2dN8 : 1.57e-06 R2N8 : -0.000514
σ : 0.961
deviance : 425.99
__
_____
C
peak time of C : 18.8
E
wheather : radiation
threshold : 0.5357
memory length : 16
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 1.97
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
418.55 0.961 4.42 -0.147 1.04 2.4 1.13 -0.864 -0.0227 19.2 0.5601 10 1.69 --
418.34 0.953 4.4 -0.109 1.01 2.4 1.59 -- -0.00876 19.1 0.53 16 1.86 --
420.15 0.955 4.42 -0.183 0.982 2.41 -- -1.69 -0.0369 18.9 0.5968 14 1.95 --
425.43 0.961 4.41 -0.13 0.979 2.37 -- -- -0.00916 18.8 0.5303 16 1.98 --
447.45 0.985 4.39 -0.16 -- 1.77 -- -1.51 -0.046 -- 1.026 12 2.51 --
526.34 1.08 4.35 -0.00257 0.742 -- -1.3 -- 0.033 10.1 -- -- -- --
532.92 1.08 4.36 -0.0521 0.746 -- -- -- 0.031 10.3 -- -- -- --
451.63 0.99 4.39 -0.132 -- 1.74 -- -- -0.0345 -- 1.028 12 2.55 --
425.99 0.961 4.41 -- 0.968 2.35 -- -- -0.00302 18.8 0.5357 16 1.97 --
566.83 1.11 4.38 -0.0634 -- -- -- -- 0.029 -- -- -- -- --
532.99 1.08 4.35 -- 0.747 -- -- -- 0.0368 10.3 -- -- -- --
452.09 0.99 4.39 -- -- 1.73 -- -- -0.0196 -- 1.022 12 2.53 --
566.93 1.11 4.37 -- -- -- -- -- 0.0361 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 409.10 wind 9.0 10 < th dose dependent rect. 20 9
2 409.46 wind 5.0 10 < th dose independent rect. 21 8
9 413.33 precipitation 0.1 10 < th dose independent rect. 21 8
10 413.33 precipitation 0.1 10 < th dose dependent rect. 21 8
19 419.86 radiation 1.0 10 < th dose independent rect. 21 9
25 421.38 radiation 1.0 10 < th dose dependent rect. 21 17
27 421.51 radiation 1.0 10 < th dose dependent rect. 21 9
29 421.63 radiation 1.0 10 < th dose dependent rect. 21 15
38 422.38 radiation 1.0 10 < th dose independent rect. 21 17
41 422.56 radiation 1.0 10 > th dose independent sin 8 NA
42 422.63 radiation 1.0 10 < th dose independent rect. 21 15
51 423.49 radiation 1.0 10 < th dose dependent sin 8 NA
60 424.37 humidity 50.0 10 > th dose dependent rect. 21 8
71 425.33 temperature 10.0 10 > th dose independent rect. 21 8
72 425.33 temperature 30.0 10 < th dose independent rect. 21 8
73 425.33 humidity 50.0 10 > th dose independent rect. 21 8
76 425.33 atmosphere 995.0 10 > th dose independent rect. 21 8
83 425.33 temperature 10.0 10 > th dose independent rect. 5 16
85 425.33 atmosphere 1015.0 10 < th dose independent rect. 5 16
86 425.36 radiation 40.0 10 < th dose dependent rect. 21 8
114 426.48 radiation 1.0 10 < th dose independent sin 8 NA
137 428.07 humidity 50.0 10 > th dose independent rect. 5 16
148 428.89 radiation 10.0 30 < th dose independent rect. 5 18
152 429.37 precipitation 0.1 10 < th dose independent rect. 23 6
153 429.37 precipitation 0.1 10 < th dose dependent rect. 23 6
163 430.17 wind 9.0 10 < th dose independent rect. 5 16
199 430.43 radiation 10.0 30 < th dose dependent rect. 5 18
200 430.55 wind 5.0 10 < th dose independent rect. 23 6
203 430.57 radiation 40.0 10 < th dose dependent rect. 5 18
204 430.62 precipitation 0.1 10 < th dose independent rect. 5 16
205 430.62 precipitation 0.1 10 < th dose dependent rect. 5 16
208 430.64 wind 9.0 10 < th dose dependent rect. 23 6
211 431.04 atmosphere 995.0 10 > th dose independent rect. 5 16
218 431.46 humidity 50.0 10 > th dose dependent rect. 5 16
230 432.17 radiation 1.0 10 < th dose independent rect. 23 7
232 432.30 radiation 10.0 30 < th dose dependent rect. 5 16
243 432.83 radiation 1.0 10 < th dose dependent rect. 23 15
248 433.04 radiation 1.0 10 < th dose dependent rect. 23 13
250 433.13 radiation 1.0 10 < th dose dependent rect. 23 8
253 433.19 radiation 10.0 30 < th dose independent rect. 5 16
263 433.61 radiation 1.0 10 < th dose independent rect. 23 15
265 433.70 wind 1.0 90 > th dose independent rect. 23 18
268 433.82 radiation 1.0 10 < th dose independent rect. 23 13
273 433.97 radiation 40.0 10 < th dose dependent rect. 5 16
281 434.56 humidity 50.0 10 > th dose dependent rect. 5 6
284 434.92 humidity 50.0 10 > th dose independent rect. 5 18
308 436.23 precipitation 0.1 10 < th dose independent rect. 9 20
309 436.23 precipitation 0.1 10 < th dose dependent rect. 9 20
338 436.92 temperature 10.0 10 > th dose independent rect. 23 6
339 436.92 temperature 30.0 10 < th dose independent rect. 23 6
340 436.92 humidity 50.0 10 > th dose independent rect. 23 6
343 436.92 atmosphere 995.0 10 > th dose independent rect. 23 6
350 436.92 temperature 10.0 10 > th dose independent rect. 5 18
352 436.92 atmosphere 1015.0 10 < th dose independent rect. 5 18
353 436.95 radiation 40.0 10 < th dose dependent rect. 23 6
389 438.36 humidity 50.0 10 > th dose dependent rect. 23 6
440 440.08 humidity 50.0 10 > th dose dependent rect. 5 18
453 440.52 precipitation 0.1 270 < th dose independent rect. 6 23
454 440.52 precipitation 0.1 270 < th dose dependent rect. 6 23
462 440.99 wind 1.0 90 > th dose dependent rect. 17 6
463 441.08 atmosphere 995.0 10 > th dose independent rect. 5 18
502 442.16 radiation 20.0 270 < th dose independent rect. 15 16
503 442.28 wind 5.0 10 < th dose dependent rect. 5 4
509 442.56 wind 9.0 10 < th dose independent rect. 5 18
511 442.63 precipitation 0.1 10 < th dose independent rect. 5 18
512 442.63 precipitation 0.1 10 < th dose dependent rect. 5 18
522 442.89 temperature 10.0 10 > th dose dependent rect. 21 8
528 443.00 radiation 40.0 270 < th dose dependent rect. 15 16
540 443.36 wind 9.0 270 < th dose independent rect. 7 9
541 443.37 temperature 10.0 10 > th dose dependent rect. 23 6
546 443.51 wind 1.0 90 > th dose independent rect. 9 8
559 443.98 wind 9.0 10 < th dose dependent rect. 14 15
563 444.12 wind 9.0 10 < th dose dependent rect. 11 18
570 444.16 wind 9.0 30 < th dose dependent rect. 9 20
579 444.45 radiation 40.0 90 < th dose dependent rect. 17 16
581 444.51 atmosphere 1015.0 10 < th dose independent rect. 21 8
589 444.66 precipitation 0.1 90 < th dose independent rect. 9 8
590 444.66 precipitation 0.1 90 < th dose dependent rect. 9 8
601 445.10 wind 9.0 10 < th dose dependent rect. 5 15
620 445.50 wind 9.0 90 < th dose dependent rect. 11 17
625 445.59 wind 1.0 90 > th dose independent rect. 21 20
630 445.77 temperature 10.0 270 > th dose independent rect. 7 9
631 445.77 atmosphere 1015.0 270 < th dose independent rect. 7 9
632 445.77 temperature 10.0 270 > th dose independent rect. 16 15
641 445.97 humidity 50.0 90 > th dose independent rect. 17 16
643 446.10 precipitation 0.1 270 < th dose independent rect. 7 9
644 446.10 precipitation 0.1 270 < th dose dependent rect. 7 9
686 446.56 wind 9.0 90 < th dose independent rect. 9 8
689 446.61 temperature 20.0 10 > th dose independent rect. 5 4
692 446.73 radiation 1.0 10 > th dose independent rect. 5 4
712 447.00 wind 9.0 10 < th dose independent rect. 9 20
713 447.00 temperature 10.0 10 > th dose dependent rect. 5 4
716 447.15 radiation 10.0 30 < th dose dependent sin 20 NA
717 447.21 humidity 70.0 10 > th dose independent rect. 5 5
723 447.32 radiation 40.0 10 < th dose dependent rect. 5 6
724 447.33 wind 1.0 90 > th dose independent rect. 21 8
751 448.13 temperature 10.0 90 > th dose independent rect. 9 8
752 448.13 atmosphere 1015.0 90 < th dose independent rect. 9 8
765 448.38 radiation 1.0 90 > th dose independent rect. 18 12
774 448.48 atmosphere 995.0 270 > th dose independent rect. 16 15
785 448.89 atmosphere 1015.0 10 < th dose independent rect. 23 6
792 449.02 wind 1.0 270 > th dose independent rect. 7 9
801 449.23 radiation 1.0 30 > th dose independent rect. 9 9
802 449.24 radiation 40.0 10 < th dose independent rect. 5 5
803 449.25 precipitation 0.1 90 < th dose independent rect. 11 17
804 449.25 precipitation 0.1 90 < th dose dependent rect. 11 17
812 449.42 radiation 30.0 10 < th dose independent rect. 5 16
813 449.47 precipitation 0.1 10 < th dose independent rect. 5 4
814 449.47 precipitation 0.1 10 < th dose dependent rect. 5 4
816 449.49 atmosphere 995.0 270 > th dose independent rect. 7 9
821 449.66 precipitation 0.1 90 < th dose independent rect. 19 23
822 449.66 precipitation 0.1 90 < th dose dependent rect. 19 23
824 449.68 wind 7.0 10 < th dose independent rect. 5 4
826 449.68 temperature 10.0 10 > th dose independent rect. 5 4
828 449.68 temperature 30.0 10 < th dose independent rect. 5 4
829 449.68 humidity 50.0 10 > th dose independent rect. 5 4
831 449.68 atmosphere 995.0 10 > th dose independent rect. 5 4
832 449.68 atmosphere 1015.0 10 < th dose independent rect. 5 4
833 449.68 temperature 10.0 10 > th dose independent rect. 9 20
844 449.88 wind 9.0 270 < th dose independent rect. 16 15
858 450.13 wind 3.0 10 < th dose independent rect. 5 4
929 450.91 wind 3.0 90 < th dose independent rect. 9 19
940 451.04 wind 1.0 90 > th dose independent rect. 23 6