Os01g0892300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os01g0892300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 204.01 | 0.671 | 6.8 | -0.0674 | 0.479 | -5.56 | -1.13 | -3.25 | 0.462 | 10.9 | 22.91 | 5225 | -- | -- |
| 209.56 | 0.674 | 6.9 | -0.305 | 0.467 | -4.61 | -1.18 | -- | 0.384 | 11 | 23.65 | 5283 | -- | -- |
| 208.54 | 0.673 | 6.79 | -0.171 | 0.43 | -5.85 | -- | -3.71 | 0.45 | 10.4 | 22.84 | 5579 | -- | -- |
| 214.88 | 0.683 | 6.91 | -0.411 | 0.427 | -4.69 | -- | -- | 0.365 | 10.4 | 23.66 | 5613 | -- | -- |
| 219.02 | 0.689 | 6.8 | -0.211 | -- | -5.85 | -- | -3.63 | 0.445 | -- | 22.8 | 5726 | -- | -- |
| 484.35 | 1.03 | 6.65 | 2.06 | 0.363 | -- | -1.15 | -- | 1.5 | 10.3 | -- | -- | -- | -- |
| 489.09 | 1.04 | 6.65 | 2.01 | 0.388 | -- | -- | -- | 1.5 | 9.28 | -- | -- | -- | -- |
| 225.28 | 0.699 | 6.92 | -0.431 | -- | -4.7 | -- | -- | 0.367 | -- | 23.54 | 5746 | -- | -- |
| 216.88 | 0.686 | 6.88 | -- | 0.486 | -4.29 | -- | -- | 0.473 | 10 | 23.75 | 5090 | -- | -- |
| 497.87 | 1.04 | 6.66 | 2.01 | -- | -- | -- | -- | 1.5 | -- | -- | -- | -- | -- |
| 595.49 | 1.14 | 6.7 | -- | 0.39 | -- | -- | -- | 1.27 | 8.89 | -- | -- | -- | -- |
| 227.07 | 0.702 | 6.88 | -- | -- | -4.08 | -- | -- | 0.492 | -- | 23.69 | 4481 | -- | -- |
| 604.18 | 1.15 | 6.71 | -- | -- | -- | -- | -- | 1.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.54 | radiation | 20 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 3 | 169.56 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 5 | 169.59 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 46 | 173.06 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 49 | 173.89 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 52 | 174.21 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 62 | 174.44 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 88 | 175.31 | humidity | 80 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 93 | 175.40 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 15 |
| 95 | 175.41 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 9 | 13 |
| 118 | 175.60 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 20 | NA |
| 224 | 176.60 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 229 | 176.61 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 232 | 176.65 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 258 | 176.79 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 14 | 22 |
| 275 | 176.85 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 280 | 176.85 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 298 | 176.90 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 307 | 176.92 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 335 | 177.01 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 377 | 177.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 413 | 177.28 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 541 | 178.16 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 558 | 178.31 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 589 | 178.58 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 600 | 178.67 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 612 | 178.69 | humidity | 70 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 703 | 179.83 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 707 | 179.86 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 709 | 179.90 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 710 | 179.90 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 717 | 180.02 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 14 |
| 732 | 180.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 21 |
| 748 | 180.27 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 752 | 180.30 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 769 | 180.39 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 804 | 180.83 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 838 | 181.04 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 845 | 181.11 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 887 | 181.25 | radiation | 1 | 14400 | < th | dose independent | sin | 4 | NA |
| 893 | 181.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 921 | 181.44 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 925 | 181.46 | radiation | 1 | 14400 | > th | dose independent | sin | 4 | NA |
| 932 | 181.48 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 935 | 181.52 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 937 | 181.53 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 942 | 181.55 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 958 | 181.60 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 972 | 181.65 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 988 | 181.76 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 999 | 181.79 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 22 |