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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0891700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0471) R2 : 0.163
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.86 (0.384) R2dE : 0.102 R2E : 0.0666
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.633 (0.0995) R2dN8 : 0.0964 R2N8 : 0.0607
σ : 0.885
deviance : 361.32
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_____
C
peak time of C : --
E
wheather : wind
threshold : 10.64
memory length : 719
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
348.15 0.877 3.18 -0.102 0.396 1.93 0.605 -7.24 0.641 13.6 10.4 547 -- --
349.39 0.871 3.19 -0.0108 0.404 3.43 0.641 -- 0.649 13.6 10.42 585 -- --
349.38 0.871 3.18 -0.0862 0.402 1.93 -- -7.16 0.635 14.2 10.4 547 -- --
350.27 0.872 3.2 0.00919 0.432 2.88 -- -- 0.642 14.3 10.6 720 -- --
359.11 0.883 3.17 -0.122 -- 1.48 -- -9.24 0.635 -- 10.4 566 -- --
392.59 0.929 3.22 -0.198 0.438 -- 0.298 -- 0.56 14.8 -- -- -- --
392.71 0.928 3.22 -0.191 0.449 -- -- -- 0.562 15.3 -- -- -- --
361.32 0.885 3.2 -0.00956 -- 2.85 -- -- 0.632 -- 10.64 720 -- --
350.27 0.872 3.2 -- 0.432 2.88 -- -- 0.643 14.3 10.6 719 -- --
404.05 0.939 3.22 -0.21 -- -- -- -- 0.55 -- -- -- -- --
393.67 0.928 3.21 -- 0.452 -- -- -- 0.583 15.3 -- -- -- --
361.32 0.885 3.2 -- -- 2.86 -- -- 0.633 -- 10.64 719 -- --
405.21 0.94 3.21 -- -- -- -- -- 0.574 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 346.71 wind 9 270 < th dose independent sin 13 NA
3 347.00 wind 7 270 > th dose dependent sin 14 NA
4 347.29 wind 9 720 > th dose dependent rect. 13 3
10 348.18 wind 9 270 > th dose independent sin 13 NA
13 348.45 wind 9 720 > th dose independent rect. 13 3
15 348.72 wind 9 720 > th dose dependent rect. 15 1
18 348.89 wind 9 270 > th dose independent rect. 12 14
27 348.99 wind 7 270 > th dose dependent rect. 12 14
31 349.09 wind 9 270 > th dose independent rect. 12 11
87 349.79 wind 9 720 > th dose independent rect. 15 1
125 351.08 wind 9 720 < th dose independent rect. 11 16
169 352.15 wind 9 720 < th dose independent sin 19 NA
181 352.44 wind 9 720 < th dose independent rect. 15 23
356 354.35 wind 9 720 < th dose independent rect. 11 8
368 354.44 wind 9 270 > th dose independent rect. 17 9
384 354.60 wind 9 720 < th dose independent rect. 7 16
395 354.69 wind 9 270 > th dose independent rect. 17 6
399 354.71 wind 9 270 > th dose dependent rect. 17 6
451 355.23 wind 9 720 > th dose independent sin 20 NA
497 355.72 wind 9 720 < th dose independent rect. 11 18
571 356.31 wind 9 720 > th dose independent rect. 22 20
604 356.40 wind 9 720 > th dose dependent rect. 22 19
658 356.47 wind 9 720 > th dose dependent rect. 22 21
709 356.62 wind 9 720 > th dose dependent rect. 18 23
777 356.80 wind 9 720 > th dose independent rect. 17 23
783 356.83 wind 9 720 > th dose independent no NA NA
875 356.95 wind 9 720 > th dose dependent no NA NA
907 356.96 wind 9 720 < th dose independent no NA NA
934 357.27 wind 9 720 < th dose independent rect. 13 16
968 357.57 wind 9 720 > th dose dependent rect. 15 23
979 357.71 wind 9 720 > th dose independent rect. 15 23