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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0891500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.26 (0.0578) R2 : 0.389
β1 : 1.52 (0.21) R2dD : 0.101 R2D : -0.0331
β2 : 1.31 (0.119) R2dC : 0.165 R2C : 0.163
β3 : 2.91 (0.311) R2dE : 0.293 R2E : -0.279
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.89 (0.979) R2dD*E : 0.275 R2D*E : -0.0147
γ1 : 0.625 (0.108) R2dN8 : 0.0656 R2N8 : 0.0244
σ : 0.903
deviance : 376.17
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_____
C
peak time of C : 2.71
E
wheather : wind
threshold : 5.3
memory length : 7252
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.18
open length of G : 1.13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
368.56 0.902 4.26 1.54 1.31 2.9 1.48 8.91 0.629 2.55 5.297 7252 8.18 1.13
439.51 0.976 3.96 1.61 1.41 2 1.63 -- 0.929 2.36 4.182 7249 8.3 1.5
376.17 0.903 4.26 1.52 1.31 2.91 -- 8.89 0.625 2.71 5.3 7252 8.18 1.13
444.51 0.982 3.96 1.57 1.38 1.84 -- -- 0.96 2.48 4.26 7338 8.28 1.45
477.08 1.02 4.25 1.59 -- 2.91 -- 8.95 0.657 -- 5.199 7187 8.22 1.17
452.53 0.997 3.99 0.8 1.29 -- 1.39 -- 0.775 2.6 -- -- -- --
459.16 1 3.99 0.764 1.3 -- -- -- 0.766 2.76 -- -- -- --
541.09 1.08 3.95 1.45 -- 1.49 -- -- 0.901 -- 4.142 7216 8.3 1.57
473.68 1.02 4.01 -- 1.32 0.864 -- -- 0.685 2.73 4.636 7491 7.86 1.8
557.99 1.1 3.99 0.82 -- -- -- -- 0.8 -- -- -- -- --
474.54 1.02 4.01 -- 1.32 -- -- -- 0.681 2.76 -- -- -- --
565.22 1.11 3.97 -- -- 0.704 -- -- 0.871 -- 3.622 7336 4.99 3.38
575.71 1.12 4.01 -- -- -- -- -- 0.709 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 380.87 wind 9.0 43200 < th dose independent rect. 16 3
2 380.97 wind 9.0 43200 > th dose independent rect. 16 3
7 383.27 precipitation 0.1 43200 > th dose dependent rect. 15 3
8 383.29 wind 9.0 14400 < th dose independent rect. 16 18
9 383.43 wind 9.0 14400 > th dose independent rect. 16 18
12 383.56 wind 9.0 14400 < th dose independent rect. 16 13
13 383.62 wind 9.0 14400 > th dose independent rect. 16 14
22 384.24 precipitation 0.1 43200 > th dose dependent rect. 17 2
26 385.29 wind 7.0 14400 > th dose dependent rect. 17 17
30 385.76 wind 9.0 14400 > th dose independent rect. 16 10
32 385.76 wind 7.0 14400 > th dose dependent rect. 17 13
47 386.04 wind 7.0 14400 < th dose independent rect. 18 11
48 386.08 wind 9.0 14400 < th dose independent rect. 16 7
49 386.11 wind 7.0 14400 < th dose independent rect. 18 15
57 386.33 wind 7.0 14400 > th dose independent rect. 18 11
62 386.36 wind 9.0 14400 > th dose dependent rect. 16 20
110 387.39 precipitation 0.1 43200 > th dose dependent rect. 16 5
135 387.94 wind 9.0 14400 > th dose dependent rect. 16 4
137 388.01 precipitation 0.1 43200 > th dose independent rect. 16 2
144 388.13 precipitation 0.1 43200 < th dose independent rect. 16 2
146 388.13 precipitation 0.1 43200 < th dose dependent rect. 16 2
162 388.43 wind 7.0 14400 > th dose dependent sin 11 NA
171 388.62 precipitation 0.1 43200 > th dose dependent rect. 17 7
178 388.71 wind 9.0 14400 < th dose independent sin 11 NA
184 389.04 wind 9.0 14400 > th dose independent sin 11 NA
189 389.13 wind 7.0 14400 > th dose dependent rect. 17 7
270 390.46 precipitation 0.1 43200 > th dose dependent rect. 20 1
360 391.63 precipitation 0.1 43200 < th dose independent rect. 17 4
361 391.63 precipitation 0.1 43200 < th dose dependent rect. 17 4
390 392.12 precipitation 0.1 43200 > th dose independent rect. 17 4
461 392.87 wind 7.0 14400 > th dose dependent rect. 19 1
572 394.02 humidity 80.0 43200 > th dose independent rect. 8 1
687 395.33 wind 1.0 14400 < th dose dependent rect. 21 5
774 396.11 precipitation 0.1 43200 > th dose dependent rect. 19 5
797 396.33 precipitation 0.1 43200 > th dose dependent rect. 17 12
803 396.39 precipitation 0.1 43200 < th dose independent rect. 20 1
804 396.39 precipitation 0.1 43200 < th dose dependent rect. 20 1
833 396.72 wind 1.0 14400 < th dose independent rect. 21 5
840 396.83 precipitation 0.1 43200 > th dose independent rect. 20 1
855 396.93 wind 1.0 14400 < th dose dependent rect. 24 2
870 397.04 precipitation 0.1 43200 > th dose dependent rect. 19 3
890 397.19 wind 5.0 14400 > th dose dependent rect. 21 1
906 397.31 radiation 30.0 43200 < th dose dependent rect. 10 1
926 397.52 wind 1.0 14400 > th dose independent rect. 24 2
932 397.56 wind 5.0 4320 > th dose dependent rect. 8 1
936 397.60 radiation 20.0 43200 < th dose independent rect. 10 1
942 397.65 humidity 70.0 43200 > th dose independent rect. 11 1
976 397.92 radiation 20.0 43200 > th dose independent rect. 10 1
980 397.95 wind 1.0 14400 > th dose independent rect. 22 4