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Os01g0888900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.3 (0.0626) R2 : 0.757
β1 : -6.35 (0.244) R2dD : 0.436 R2D : 0.247
β2 : 3.54 (0.146) R2dC : 0.315 R2C : 0.321
β3 : 2.69 (0.173) R2dE : 0.162 R2E : 0.0217
β4 : -2.36 (0.557) R2dD*C : 0.00966 R2D*C : 0.00245
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0591 (0.14) R2dN8 : 0.000109 R2N8 : -0.00656
σ : 1.15
deviance : 612.94
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C
peak time of C : 23.8
E
wheather : temperature
threshold : 20.01
memory length : 1429
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.2
open length of G : 3.94

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
599.86 1.15 8.35 -6.75 3.59 2.56 -2.19 -1.79 -0.14 23.8 20.02 1416 20.4 3.85
612.94 1.15 8.3 -6.35 3.54 2.69 -2.36 -- -0.0591 23.8 20.01 1429 20.2 3.94
620.15 1.16 8.35 -6.72 3.62 2.58 -- -1.96 -0.162 23.7 20.05 1415 20.4 3.99
636.12 1.17 8.28 -6.26 3.59 2.72 -- -- -0.0246 23.7 20.04 1424 20.3 4
870.34 1.37 8.48 -7.41 -- 4.88 -- -3.1 -0.433 -- 21.3 2217 15 5.75
934.51 1.43 8.11 -4.94 3.62 -- -2.72 -- 0.72 24 -- -- -- --
966.17 1.46 8.1 -4.83 3.63 -- -- -- 0.734 23.9 -- -- -- --
810.55 1.33 8.19 -7.06 -- 5.82 -- -- -0.0682 -- 20.91 2198 14.4 6.85
1526.21 1.82 8.3 -- 3.52 1.62 -- -- 0.672 23.4 21.29 1382 21.6 2.67
1797.39 1.98 8.02 -4.72 -- -- -- -- 0.783 -- -- -- -- --
1581.99 1.86 7.98 -- 3.57 -- -- -- 1.27 23.8 -- -- -- --
1645.45 1.89 7.68 -- -- 3.49 -- -- 2.01 -- 14.4 751 14.9 5.23
2386.06 2.28 7.9 -- -- -- -- -- 1.31 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 603.40 temperature 20 1440 > th dose independent rect. 20 4
2 605.58 temperature 20 1440 > th dose independent rect. 21 2
12 615.84 temperature 20 1440 < th dose independent rect. 20 4
14 618.13 temperature 20 1440 < th dose independent rect. 21 2
17 620.06 temperature 20 720 > th dose independent rect. 16 17
23 621.46 temperature 20 720 > th dose independent sin 12 NA
76 634.24 temperature 20 720 < th dose independent sin 13 NA
80 635.31 temperature 20 720 > th dose independent rect. 5 22
92 637.93 temperature 20 720 < th dose independent rect. 16 15
297 654.11 temperature 20 720 < th dose independent rect. 5 23
342 656.44 temperature 20 720 > th dose independent no NA NA
364 657.71 temperature 20 720 > th dose independent rect. 19 23
391 658.85 temperature 20 720 > th dose independent rect. 11 15
400 659.44 temperature 20 720 > th dose independent rect. 8 23
429 660.64 temperature 20 720 < th dose independent no NA NA
457 662.47 temperature 20 720 > th dose independent rect. 10 17
460 662.74 wind 9 4320 < th dose independent rect. 17 4
523 666.42 wind 9 4320 > th dose dependent rect. 18 3
540 667.46 wind 9 4320 > th dose independent rect. 17 4
589 670.54 temperature 20 720 < th dose independent rect. 23 23
736 678.34 humidity 90 14400 > th dose dependent rect. 13 18
797 681.07 humidity 90 14400 > th dose dependent rect. 4 4
822 682.20 humidity 90 14400 > th dose dependent rect. 5 2
839 683.07 humidity 90 14400 > th dose dependent rect. 23 20
863 683.96 wind 9 4320 > th dose independent rect. 17 11
896 684.89 humidity 90 14400 > th dose independent rect. 17 14
953 686.62 humidity 90 14400 > th dose dependent sin 14 NA
988 687.65 humidity 90 14400 > th dose dependent rect. 22 3
999 687.96 humidity 90 14400 > th dose independent rect. 18 10