Os01g0888600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Seven transmembrane protein Mlo5 (Fragment).
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Os01g0888600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Seven transmembrane protein Mlo5 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.4 | 0.276 | 10.3 | -0.588 | 0.875 | 0.995 | 0.465 | -1.26 | 0.023 | 5.57 | 16.2 | 1961 | -- | -- |
| 35.65 | 0.278 | 10.3 | -0.307 | 0.869 | 1.04 | 0.565 | -- | 0.101 | 5.63 | 14.24 | 1991 | -- | -- |
| 34.9 | 0.275 | 10.3 | -0.635 | 0.878 | 0.942 | -- | -1.38 | 0.0117 | 5.56 | 17.5 | 1973 | -- | -- |
| 36.29 | 0.281 | 10.3 | -0.289 | 0.876 | 1.04 | -- | -- | 0.102 | 5.61 | 14.17 | 1988 | -- | -- |
| 66.12 | 0.379 | 10.3 | -0.586 | -- | 0.984 | -- | -0.981 | 0.0364 | -- | 16.66 | 2729 | -- | -- |
| 54.13 | 0.345 | 10.3 | 0.0598 | 0.815 | -- | 0.485 | -- | 0.301 | 5.27 | -- | -- | -- | -- |
| 54.71 | 0.346 | 10.3 | 0.0603 | 0.818 | -- | -- | -- | 0.299 | 5.28 | -- | -- | -- | -- |
| 66.79 | 0.381 | 10.3 | -0.341 | -- | 1.05 | -- | -- | 0.1 | -- | 14 | 2740 | -- | -- |
| 38.16 | 0.288 | 10.3 | -- | 0.865 | 0.913 | -- | -- | 0.152 | 5.56 | 14.16 | 1960 | -- | -- |
| 89.69 | 0.443 | 10.3 | 0.0886 | -- | -- | -- | -- | 0.319 | -- | -- | -- | -- | -- |
| 54.81 | 0.346 | 10.3 | -- | 0.819 | -- | -- | -- | 0.292 | 5.28 | -- | -- | -- | -- |
| 68.31 | 0.385 | 10.3 | -- | -- | 1.05 | -- | -- | 0.155 | -- | 14.01 | 1288 | -- | -- |
| 89.89 | 0.443 | 10.3 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 2 | 34.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 6 | 34.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 44 | 34.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 57 | 34.45 | temperature | 15 | 10 | > th | dose dependent | sin | 12 | NA |
| 64 | 34.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 88 | 34.53 | temperature | 10 | 1440 | > th | dose dependent | sin | 15 | NA |
| 92 | 34.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 11 |
| 204 | 34.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 212 | 34.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 226 | 34.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 264 | 34.84 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 379 | 35.00 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 19 |
| 380 | 35.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 19 |
| 403 | 35.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 405 | 35.02 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 12 |
| 409 | 35.02 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 416 | 35.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 425 | 35.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 449 | 35.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 480 | 35.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 16 |
| 505 | 35.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 16 |
| 559 | 35.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 13 |
| 632 | 35.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 21 |
| 634 | 35.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 22 |
| 658 | 35.14 | temperature | 25 | 4320 | > th | dose independent | sin | 20 | NA |
| 689 | 35.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 21 |
| 744 | 35.17 | temperature | 25 | 4320 | < th | dose independent | sin | 20 | NA |
| 749 | 35.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 22 |
| 945 | 35.25 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 946 | 35.25 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 960 | 35.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |