FiT-DB / Search/ Help/ Sample detail
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Os01g0888500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.35 | 0.377 | 11.8 | 0.467 | 2.57 | 0.497 | 0.308 | 1.11 | -0.158 | 18.2 | 35.57 | 69 | -- | -- |
| 64.87 | 0.375 | 11.8 | 0.397 | 2.37 | 0.643 | 0.133 | -- | -0.161 | 18.2 | 30.34 | 375 | -- | -- |
| 64.58 | 0.374 | 11.8 | 0.466 | 2.57 | 0.495 | -- | 1.1 | -0.156 | 18.2 | 35.76 | 70 | -- | -- |
| 64.8 | 0.375 | 11.8 | 0.42 | 2.33 | 0.679 | -- | -- | -0.174 | 18.2 | 30.35 | 378 | -- | -- |
| 97.71 | 0.46 | 11.8 | 0.0779 | -- | 3.02 | -- | 1.15 | -0.501 | -- | 2.036 | 728 | -- | -- |
| 71.35 | 0.396 | 11.8 | 0.47 | 2.6 | -- | 0.252 | -- | -0.128 | 18 | -- | -- | -- | -- |
| 71.5 | 0.396 | 11.8 | 0.467 | 2.6 | -- | -- | -- | -0.127 | 18 | -- | -- | -- | -- |
| 90.54 | 0.443 | 11.7 | 0.273 | -- | 3.16 | -- | -- | -0.319 | -- | 2.26 | 736 | -- | -- |
| 68.88 | 0.387 | 11.8 | -- | 2.29 | 0.709 | -- | -- | -0.241 | 18.2 | 30.34 | 396 | -- | -- |
| 421.6 | 0.959 | 11.7 | 0.391 | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
| 77.26 | 0.411 | 11.8 | -- | 2.59 | -- | -- | -- | -0.179 | 18 | -- | -- | -- | -- |
| 93.07 | 0.449 | 11.7 | -- | -- | 3.21 | -- | -- | -0.329 | -- | 2.19 | 738 | -- | -- |
| 425.63 | 0.963 | 11.7 | -- | -- | -- | -- | -- | -0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 2 | 62.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 3 | 62.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 4 | 62.86 | wind | 5.0 | 720 | < th | dose independent | rect. | 8 | 2 |
| 5 | 62.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 8 | 63.08 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 10 | 63.24 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 11 | 63.25 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 12 | 63.27 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 6 |
| 13 | 63.28 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 21 | 63.39 | wind | 1.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 24 | 63.41 | wind | 5.0 | 720 | < th | dose independent | rect. | 7 | 4 |
| 25 | 63.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 34 | 63.63 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 46 | 63.73 | radiation | 10.0 | 720 | < th | dose independent | rect. | 20 | 15 |
| 51 | 63.74 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 66 | 63.80 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 113 | 63.97 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 134 | 64.02 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 18 | NA |
| 135 | 64.02 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 6 |
| 136 | 64.02 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 177 | 64.06 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 13 |
| 187 | 64.07 | radiation | 10.0 | 720 | > th | dose independent | rect. | 8 | 2 |
| 217 | 64.11 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 218 | 64.11 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 243 | 64.14 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 268 | 64.16 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 23 | 20 |
| 279 | 64.17 | atmosphere | 1005.0 | 43200 | < th | dose dependent | no | NA | NA |
| 282 | 64.17 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 291 | 64.18 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 312 | 64.19 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 396 | 64.26 | wind | 1.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 414 | 64.27 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 433 | 64.29 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 477 | 64.32 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 2 |
| 479 | 64.32 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 511 | 64.34 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 523 | 64.34 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 541 | 64.36 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 557 | 64.37 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 574 | 64.38 | radiation | 10.0 | 720 | < th | dose independent | rect. | 4 | 7 |
| 585 | 64.39 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 590 | 64.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 606 | 64.40 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 607 | 64.40 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 622 | 64.41 | wind | 5.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 623 | 64.41 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 700 | 64.46 | radiation | 10.0 | 720 | < th | dose independent | rect. | 2 | 9 |
| 723 | 64.48 | radiation | 30.0 | 720 | > th | dose independent | rect. | 9 | 1 |
| 725 | 64.48 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 735 | 64.49 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 18 | NA |
| 746 | 64.50 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 4 | 7 |
| 794 | 64.55 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 800 | 64.55 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 812 | 64.57 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 816 | 64.57 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 818 | 64.57 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 832 | 64.58 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 20 |
| 875 | 64.63 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 877 | 64.63 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 900 | 64.66 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 905 | 64.66 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 8 |
| 923 | 64.68 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 949 | 64.70 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 955 | 64.70 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 961 | 64.71 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 962 | 64.71 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 963 | 64.71 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 975 | 64.72 | radiation | 10.0 | 720 | < th | dose independent | rect. | 6 | 5 |
| 998 | 64.75 | humidity | 50.0 | 14400 | < th | dose independent | sin | 10 | NA |
