Os01g0888300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAC-domain containing protein 18 (ANAC018) (NO APICAL MERISTEM protein) (AtNAM).
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Os01g0888300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAC-domain containing protein 18 (ANAC018) (NO APICAL MERISTEM protein) (AtNAM).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.42 | 0.389 | 8.01 | 2.15 | 0.426 | -1.06 | 0.336 | 5.48 | 0.276 | 14.4 | 20.61 | 1887 | -- | -- |
| 87.3 | 0.435 | 8.15 | 0.933 | 0.34 | -1.12 | -0.119 | -- | 0.0248 | 12.5 | 13.7 | 8436 | -- | -- |
| 68.79 | 0.386 | 8.01 | 2.15 | 0.431 | -1.05 | -- | 5.47 | 0.276 | 14.2 | 20.6 | 1860 | -- | -- |
| 86.4 | 0.433 | 8.16 | 0.898 | 0.401 | -1.15 | -- | -- | -0.0142 | 13.4 | 12.01 | 7587 | -- | -- |
| 77.9 | 0.411 | 8 | 2.24 | -- | -1.1 | -- | 5.53 | 0.282 | -- | 20.41 | 2452 | -- | -- |
| 107.55 | 0.486 | 8.23 | 0.305 | 0.429 | -- | 0.186 | -- | -0.332 | 13.4 | -- | -- | -- | -- |
| 107.68 | 0.486 | 8.23 | 0.311 | 0.428 | -- | -- | -- | -0.332 | 13.3 | -- | -- | -- | -- |
| 95.16 | 0.454 | 8.16 | 0.926 | -- | -1.2 | -- | -- | 0.00859 | -- | 7.338 | 8229 | -- | -- |
| 100.98 | 0.468 | 8.21 | -- | 0.392 | -0.623 | -- | -- | -0.24 | 13.1 | 11.9 | 7056 | -- | -- |
| 119.01 | 0.51 | 8.24 | 0.295 | -- | -- | -- | -- | -0.34 | -- | -- | -- | -- | -- |
| 110.23 | 0.491 | 8.24 | -- | 0.423 | -- | -- | -- | -0.366 | 13.2 | -- | -- | -- | -- |
| 109.27 | 0.487 | 8.22 | -- | -- | -0.518 | -- | -- | -0.242 | -- | 22.7 | 6949 | -- | -- |
| 121.3 | 0.514 | 8.25 | -- | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.61 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 2 | 61.82 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 3 | 62.56 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 4 | 62.75 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 5 | 62.87 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 6 | 62.89 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 7 | 62.92 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 8 | 63.02 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 18 | 63.09 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 20 | 63.28 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 21 | 63.35 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 23 | 63.39 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 24 | 63.45 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 28 | 63.66 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 30 | 63.71 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 31 | 63.75 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 35 | 63.87 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 36 | 63.90 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 41 | 63.97 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 45 | 64.04 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 51 | 64.16 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 54 | 64.23 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 61 | 64.35 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 67 | 64.47 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 15 |
| 70 | 64.51 | wind | 7 | 43200 | < th | dose dependent | sin | 21 | NA |
| 79 | 64.56 | wind | 1 | 43200 | > th | dose dependent | sin | 21 | NA |
| 87 | 64.67 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 108 | 64.81 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 119 | 64.85 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 123 | 64.86 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 131 | 64.88 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 146 | 64.92 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 150 | 64.93 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 201 | 65.07 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 226 | 65.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 231 | 65.16 | wind | 3 | 43200 | > th | dose independent | sin | 23 | NA |
| 414 | 65.71 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 430 | 65.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 459 | 65.88 | wind | 3 | 43200 | < th | dose independent | sin | 0 | NA |
| 509 | 65.99 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 20 |
| 541 | 66.09 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 608 | 66.31 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 646 | 66.41 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 648 | 66.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 840 | 66.84 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 870 | 66.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 879 | 66.91 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 888 | 66.93 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 908 | 66.96 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 990 | 67.14 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 996 | 67.14 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 23 |