Os01g0886200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AGAMOUS homolog.
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Os01g0886200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AGAMOUS homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.06 | 0.646 | 3.31 | 0.491 | 0.141 | -2.77 | 0.0859 | -12.1 | -0.0947 | 10.8 | 8.699 | 677 | -- | -- |
| 193.84 | 0.653 | 3.25 | 0.352 | 0.118 | -0.23 | 0.0222 | -- | -0.0829 | 10.5 | 8.699 | 677 | -- | -- |
| 189.08 | 0.64 | 3.31 | 0.501 | 0.142 | -2.76 | -- | -11.9 | -0.0955 | 10.8 | 8.7 | 666 | -- | -- |
| 193.48 | 0.648 | 3.25 | 0.375 | 0.113 | -0.486 | -- | -- | -0.0825 | 8.24 | 10 | 377 | -- | -- |
| 190.26 | 0.642 | 3.31 | 0.487 | -- | -2.66 | -- | -11.8 | -0.0974 | -- | 8.649 | 664 | -- | -- |
| 194.02 | 0.653 | 3.25 | 0.337 | 0.118 | -- | 0.00621 | -- | -0.088 | 10.7 | -- | -- | -- | -- |
| 194.02 | 0.652 | 3.25 | 0.337 | 0.118 | -- | -- | -- | -0.088 | 10.7 | -- | -- | -- | -- |
| 194.18 | 0.649 | 3.25 | 0.373 | -- | -0.424 | -- | -- | -0.0802 | -- | 9.995 | 377 | -- | -- |
| 196.9 | 0.654 | 3.26 | -- | 0.121 | -0.258 | -- | -- | -0.121 | 8.61 | 9.999 | 400 | -- | -- |
| 194.88 | 0.652 | 3.25 | 0.335 | -- | -- | -- | -- | -0.0886 | -- | -- | -- | -- | -- |
| 197.02 | 0.657 | 3.26 | -- | 0.115 | -- | -- | -- | -0.126 | 10.5 | -- | -- | -- | -- |
| 197.6 | 0.655 | 3.26 | -- | -- | -0.253 | -- | -- | -0.121 | -- | 9.942 | 385 | -- | -- |
| 197.83 | 0.657 | 3.26 | -- | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.61 | wind | 1.0 | 90 | < th | dose independent | rect. | 8 | 16 |
| 2 | 183.24 | wind | 1.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 3 | 183.29 | wind | 1.0 | 90 | < th | dose dependent | rect. | 8 | 16 |
| 4 | 183.95 | wind | 1.0 | 90 | < th | dose dependent | rect. | 23 | 1 |
| 7 | 184.18 | wind | 1.0 | 90 | < th | dose independent | rect. | 22 | 2 |
| 8 | 184.32 | humidity | 50.0 | 10 | < th | dose independent | rect. | 13 | 5 |
| 26 | 184.38 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 13 | 5 |
| 44 | 184.62 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 20 | 3 |
| 48 | 184.77 | humidity | 50.0 | 90 | < th | dose independent | rect. | 12 | 3 |
| 49 | 184.82 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 12 | 3 |
| 51 | 184.84 | humidity | 50.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 74 | 185.01 | humidity | 50.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 113 | 185.14 | wind | 1.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 114 | 185.15 | humidity | 50.0 | 10 | < th | dose independent | sin | 13 | NA |
| 116 | 185.24 | radiation | 30.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 165 | 185.50 | humidity | 50.0 | 10 | > th | dose independent | sin | 12 | NA |
| 183 | 185.69 | wind | 1.0 | 30 | < th | dose dependent | rect. | 13 | 12 |
| 184 | 185.73 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 20 | 3 |
| 215 | 185.76 | wind | 1.0 | 30 | < th | dose dependent | rect. | 10 | 15 |
| 270 | 186.01 | wind | 1.0 | 30 | < th | dose independent | rect. | 10 | 15 |
| 315 | 186.14 | wind | 1.0 | 30 | < th | dose independent | rect. | 13 | 12 |
| 485 | 186.66 | humidity | 50.0 | 90 | < th | dose independent | sin | 7 | NA |
| 528 | 186.80 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 532 | 186.85 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 21 | 3 |
| 655 | 187.63 | wind | 7.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 657 | 187.65 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 666 | 187.71 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 21 | 3 |
| 669 | 187.73 | wind | 7.0 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 679 | 187.77 | wind | 7.0 | 720 | < th | dose independent | rect. | 13 | 23 |
| 712 | 187.86 | wind | 7.0 | 720 | < th | dose independent | rect. | 24 | 17 |
| 717 | 187.88 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 23 | 1 |
| 722 | 187.88 | radiation | 30.0 | 90 | > th | dose independent | rect. | 12 | 21 |
| 723 | 187.88 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 23 | 1 |
| 750 | 187.94 | wind | 7.0 | 720 | < th | dose independent | rect. | 7 | 19 |
| 753 | 187.94 | wind | 7.0 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 761 | 187.99 | wind | 7.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 796 | 188.03 | wind | 1.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 812 | 188.08 | wind | 1.0 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 813 | 188.09 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 822 | 188.09 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 871 | 188.12 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 13 | 12 |
| 878 | 188.12 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 13 | 16 |
| 893 | 188.14 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 13 | 9 |
| 930 | 188.28 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 13 | 6 |
| 955 | 188.33 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 22 | 2 |
| 958 | 188.33 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 22 | 2 |
| 982 | 188.37 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 987 | 188.38 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 1000 | 188.44 | wind | 1.0 | 90 | > th | dose independent | sin | 19 | NA |