Os01g0885700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os01g0885700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.59 | 0.565 | 4.24 | 1.84 | 0.864 | 1.27 | 1.36 | -0.857 | 0.317 | 10.7 | 20.54 | 737 | 4.5 | 2.3 |
| 145.14 | 0.561 | 4.23 | 1.99 | 0.854 | 1.24 | 1.23 | -- | 0.355 | 10.7 | 20.35 | 736 | 4.63 | 2.1 |
| 151.45 | 0.573 | 4.24 | 2.01 | 0.832 | 1.3 | -- | -0.122 | 0.327 | 10.6 | 20.5 | 734 | 4.51 | 2.3 |
| 151.14 | 0.573 | 4.23 | 2.04 | 0.829 | 1.26 | -- | -- | 0.36 | 10.6 | 20.27 | 736 | 4.62 | 2.12 |
| 153.89 | 0.578 | 4.22 | 2.17 | -- | 1.79 | -- | 0.936 | 0.381 | -- | 12.34 | 750 | 3.4 | 3.47 |
| 190.43 | 0.647 | 4.14 | 2.19 | 1.5 | -- | 1.39 | -- | 0.673 | 11.1 | -- | -- | -- | -- |
| 198.6 | 0.66 | 4.14 | 2.24 | 1.5 | -- | -- | -- | 0.678 | 11.1 | -- | -- | -- | -- |
| 156.75 | 0.583 | 4.23 | 2.08 | -- | 1.81 | -- | -- | 0.41 | -- | 12.77 | 748 | 3.45 | 3.57 |
| 257.6 | 0.748 | 4.28 | -- | 0.701 | 1.52 | -- | -- | 0.0749 | 10.2 | 19.97 | 776 | 4.38 | 2.1 |
| 338.26 | 0.859 | 4.17 | 2.21 | -- | -- | -- | -- | 0.666 | -- | -- | -- | -- | -- |
| 331.41 | 0.852 | 4.19 | -- | 1.48 | -- | -- | -- | 0.428 | 11 | -- | -- | -- | -- |
| 257.22 | 0.747 | 4.31 | -- | -- | 2 | -- | -- | 0.0861 | -- | 14.95 | 769 | 3.15 | 3.8 |
| 467.09 | 1.01 | 4.23 | -- | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.03 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 17 | 154.35 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 28 | 156.20 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 35 | 156.41 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 46 | 156.93 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 50 | 157.25 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 51 | 157.28 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 52 | 157.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 58 | 157.51 | temperature | 20.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 59 | 157.59 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 76 | 158.08 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 1 |
| 121 | 158.93 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 149 | 159.52 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 186 | 159.94 | temperature | 30.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 194 | 160.01 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 249 | 160.77 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 256 | 160.84 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 259 | 160.86 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 347 | 161.90 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 352 | 161.96 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 361 | 162.04 | temperature | 15.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 468 | 162.84 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 469 | 162.85 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 16 |
| 471 | 162.86 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 473 | 162.86 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 12 |
| 474 | 162.86 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 479 | 162.87 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 6 |
| 526 | 163.11 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 13 |
| 530 | 163.12 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 543 | 163.24 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 10 |
| 548 | 163.27 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 549 | 163.28 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 551 | 163.29 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 560 | 163.36 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 599 | 163.58 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 611 | 163.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 615 | 163.64 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 622 | 163.70 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 21 |
| 638 | 163.77 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 646 | 163.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 665 | 163.93 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 676 | 163.96 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 20 |
| 713 | 164.13 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 714 | 164.14 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 10 |
| 748 | 164.28 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 770 | 164.40 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 783 | 164.41 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 792 | 164.44 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 12 |
| 807 | 164.51 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 836 | 164.55 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 19 | 14 |
| 837 | 164.55 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 840 | 164.56 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 882 | 164.64 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 883 | 164.65 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 903 | 164.71 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 7 |
| 912 | 164.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 913 | 164.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 914 | 164.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 917 | 164.74 | temperature | 30.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 953 | 164.82 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 8 |
| 955 | 164.82 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 962 | 164.84 | temperature | 30.0 | 4320 | > th | dose independent | sin | 17 | NA |
| 978 | 164.87 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 22 |