Os01g0885500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0885500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.27 | 0.424 | 7.08 | 1.88 | 0.408 | -1.51 | -0.458 | 5.66 | -0.175 | 19.9 | 26.59 | 4265 | -- | -- |
| 81.48 | 0.42 | 7.14 | 0.817 | 0.372 | -0.914 | -0.499 | -- | -0.005 | 19.4 | 22.88 | 8465 | -- | -- |
| 81.83 | 0.421 | 7.08 | 1.92 | 0.413 | -1.53 | -- | 5.86 | -0.176 | 19.6 | 26.69 | 4247 | -- | -- |
| 81.86 | 0.421 | 7.14 | 0.82 | 0.391 | -0.921 | -- | -- | -0.0113 | 19.6 | 22.83 | 8431 | -- | -- |
| 90.89 | 0.444 | 7.08 | 1.82 | -- | -1.47 | -- | 5.39 | -0.187 | -- | 26.62 | 4282 | -- | -- |
| 112.33 | 0.497 | 7.23 | 0.377 | 0.4 | -- | -0.361 | -- | -0.37 | 19.3 | -- | -- | -- | -- |
| 112.62 | 0.497 | 7.23 | 0.386 | 0.402 | -- | -- | -- | -0.37 | 19 | -- | -- | -- | -- |
| 89.65 | 0.441 | 7.14 | 0.804 | -- | -0.91 | -- | -- | -0.0221 | -- | 23 | 8544 | -- | -- |
| 94.25 | 0.452 | 7.19 | -- | 0.358 | -0.699 | -- | -- | -0.175 | 20 | 27.1 | 8458 | -- | -- |
| 121.13 | 0.514 | 7.22 | 0.377 | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
| 116.54 | 0.505 | 7.24 | -- | 0.398 | -- | -- | -- | -0.413 | 19 | -- | -- | -- | -- |
| 101.84 | 0.47 | 7.18 | -- | -- | -0.697 | -- | -- | -0.195 | -- | 27.32 | 8506 | -- | -- |
| 124.88 | 0.522 | 7.23 | -- | -- | -- | -- | -- | -0.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 4 | 79.92 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 5 | 80.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 15 | 80.20 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 16 | 80.20 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 17 | 80.22 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 19 | 80.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 24 | 80.37 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 34 | 80.62 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 51 | 80.85 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 57 | 80.92 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 65 | 80.99 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 68 | 81.01 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 75 | 81.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 82 | 81.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 88 | 81.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 112 | 81.34 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 113 | 81.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 125 | 81.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 137 | 81.52 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 142 | 81.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 146 | 81.61 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 13 |
| 152 | 81.64 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 157 | 81.66 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 188 | 81.80 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 202 | 81.86 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 210 | 81.89 | wind | 7 | 43200 | > th | dose independent | sin | 4 | NA |
| 218 | 81.91 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 241 | 81.98 | wind | 7 | 43200 | < th | dose independent | sin | 4 | NA |
| 252 | 82.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 292 | 82.13 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 297 | 82.14 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 17 |
| 298 | 82.14 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 20 |
| 405 | 82.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 408 | 82.34 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 435 | 82.37 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 440 | 82.38 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 458 | 82.44 | temperature | 25 | 4320 | > th | dose dependent | sin | 16 | NA |
| 488 | 82.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 503 | 82.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 21 |
| 549 | 82.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 555 | 82.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 557 | 82.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 558 | 82.62 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 602 | 82.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 676 | 82.85 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 21 |
| 729 | 82.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 792 | 83.05 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 847 | 83.16 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 849 | 83.16 | wind | 5 | 43200 | > th | dose dependent | sin | 2 | NA |
| 899 | 83.28 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 904 | 83.29 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 952 | 83.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 956 | 83.44 | humidity | 90 | 43200 | > th | dose dependent | rect. | 14 | 17 |
| 957 | 83.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 958 | 83.45 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 15 |
| 966 | 83.47 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 967 | 83.47 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 989 | 83.51 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 992 | 83.52 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 999 | 83.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 10 |