Os01g0884400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os01g0884400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.91 | 0.433 | 9.97 | 1.21 | 1.04 | 0.841 | 0.191 | -0.0917 | 0.48 | 0.345 | 8.426 | 49 | -- | -- |
| 84.86 | 0.429 | 9.97 | 1.21 | 1.04 | 0.839 | 0.0893 | -- | 0.48 | 0.33 | 7.477 | 51 | -- | -- |
| 84.88 | 0.429 | 9.97 | 1.21 | 1.05 | 0.833 | -- | 0.0526 | 0.477 | 0.329 | 7.494 | 51 | -- | -- |
| 84.89 | 0.429 | 9.97 | 1.21 | 1.04 | 0.839 | -- | -- | 0.479 | 0.334 | 7.467 | 51 | -- | -- |
| 97.32 | 0.459 | 9.94 | 1.19 | -- | 1.61 | -- | 0.0296 | 0.54 | -- | 10.15 | 36 | -- | -- |
| 96.65 | 0.461 | 10 | 1.22 | 2 | -- | 0.108 | -- | 0.409 | 0.246 | -- | -- | -- | -- |
| 96.7 | 0.46 | 10 | 1.21 | 2 | -- | -- | -- | 0.409 | 0.247 | -- | -- | -- | -- |
| 95.76 | 0.456 | 9.95 | 1.21 | -- | 1.61 | -- | -- | 0.535 | -- | 6.236 | 71 | -- | -- |
| 122.8 | 0.516 | 10 | -- | 1.02 | 0.884 | -- | -- | 0.344 | 0.359 | 9.34 | 51 | -- | -- |
| 348.68 | 0.873 | 9.97 | 1.28 | -- | -- | -- | -- | 0.44 | -- | -- | -- | -- | -- |
| 135.46 | 0.544 | 10 | -- | 2.02 | -- | -- | -- | 0.274 | 0.279 | -- | -- | -- | -- |
| 134.12 | 0.539 | 9.97 | -- | -- | 1.63 | -- | -- | 0.408 | -- | 10 | 41 | -- | -- |
| 391.8 | 0.924 | 10 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.04 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 3 |
| 2 | 80.25 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 5 |
| 4 | 80.48 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 11 |
| 6 | 81.13 | temperature | 25.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 8 | 81.54 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 14 |
| 12 | 81.74 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 16 | 82.06 | temperature | 25.0 | 30 | < th | dose independent | rect. | 1 | 19 |
| 22 | 82.29 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 25 | 82.48 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 12 |
| 29 | 82.58 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 30 | 82.64 | temperature | 30.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 35 | 82.77 | temperature | 25.0 | 30 | < th | dose independent | sin | 23 | NA |
| 38 | 82.93 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 41 | 82.95 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 45 | 83.01 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 5 |
| 49 | 83.08 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 54 | 83.20 | temperature | 25.0 | 30 | < th | dose independent | rect. | 8 | 12 |
| 57 | 83.22 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 61 | 83.26 | temperature | 25.0 | 30 | > th | dose independent | sin | 23 | NA |
| 78 | 83.37 | temperature | 25.0 | 30 | > th | dose independent | rect. | 23 | 19 |
| 81 | 83.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 96 | 83.60 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 97 | 83.61 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 110 | 83.73 | temperature | 25.0 | 30 | > th | dose independent | rect. | 8 | 10 |
| 111 | 83.73 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 17 |
| 128 | 83.85 | temperature | 25.0 | 30 | < th | dose independent | rect. | 6 | 14 |
| 144 | 83.97 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 149 | 83.99 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 12 |
| 152 | 84.01 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 163 | 84.07 | temperature | 20.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 171 | 84.10 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 180 | 84.15 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 258 | 84.54 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 285 | 84.71 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 346 | 84.99 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 347 | 85.01 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 12 |
| 378 | 85.13 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 407 | 85.23 | radiation | 30.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 411 | 85.24 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 18 |
| 412 | 85.24 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 431 | 85.29 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 432 | 85.29 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 435 | 85.30 | radiation | 10.0 | 30 | < th | dose dependent | no | NA | NA |
| 439 | 85.31 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 440 | 85.31 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 471 | 85.39 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 472 | 85.39 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 491 | 85.43 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 507 | 85.47 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 22 |
| 510 | 85.47 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 22 |
| 541 | 85.54 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 12 |
| 542 | 85.54 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 543 | 85.54 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 547 | 85.56 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 548 | 85.56 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 554 | 85.57 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 576 | 85.60 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 667 | 85.74 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 688 | 85.77 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 691 | 85.78 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 764 | 85.86 | radiation | 1.0 | 90 | < th | dose independent | rect. | 24 | 23 |
| 978 | 86.10 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 979 | 86.10 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 3 |