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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0884200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.75 (0.0305) R2 : 0.53
β1 : 2.51 (0.117) R2dD : 0.556 R2D : 0.378
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.6 (0.142) R2dE : 0.16 R2E : -0.0131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.127 (0.0682) R2dN8 : 0.00542 R2N8 : -0.0279
σ : 0.563
deviance : 146.29
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 55.27
memory length : 908
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.32 0.532 4.73 2.48 0.642 1.63 1.02 -0.225 0.153 12 24.02 218 -- --
128.05 0.527 4.74 2.44 0.65 1.72 1.04 -- 0.129 11.9 23.43 184 -- --
131.34 0.534 4.74 2.53 0.684 1.58 -- -0.931 0.111 12 23.55 132 -- --
132.43 0.536 4.74 2.49 0.698 1.78 -- -- 0.126 12.1 23.35 141 -- --
146.49 0.564 4.72 2.65 -- 1.63 -- -0.705 0.175 -- 34.29 927 -- --
165.93 0.604 4.8 2.04 0.509 -- 1.15 -- -0.13 11.1 -- -- -- --
171.46 0.613 4.8 2.09 0.504 -- -- -- -0.125 11.4 -- -- -- --
146.29 0.563 4.75 2.51 -- 1.6 -- -- 0.127 -- 55.27 908 -- --
279.47 0.783 4.83 -- 0.578 0.711 -- -- -0.282 11.4 22.9 90 -- --
187.36 0.64 4.81 2.07 -- -- -- -- -0.13 -- -- -- -- --
286.13 0.791 4.85 -- 0.483 -- -- -- -0.357 11.1 -- -- -- --
294.18 0.799 4.84 -- -- 0.606 -- -- -0.283 -- 76.33 813 -- --
300.69 0.809 4.86 -- -- -- -- -- -0.36 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 129.32 temperature 25 90 < th dose dependent rect. 15 21
5 129.59 temperature 25 270 < th dose dependent rect. 2 23
14 129.91 temperature 25 270 < th dose dependent rect. 4 23
24 130.16 temperature 25 270 < th dose dependent rect. 7 23
28 130.25 temperature 25 270 < th dose dependent no NA NA
30 130.32 temperature 25 270 < th dose dependent rect. 19 23
32 130.36 temperature 25 90 < th dose dependent rect. 21 23
152 132.88 temperature 25 90 < th dose dependent rect. 21 15
166 132.99 temperature 10 720 > th dose dependent rect. 9 19
273 134.62 temperature 25 1440 < th dose dependent rect. 6 6
279 134.65 temperature 30 720 < th dose dependent rect. 9 17
316 135.08 temperature 10 270 > th dose dependent rect. 16 23
333 135.24 radiation 10 14400 > th dose independent rect. 5 1
417 135.66 temperature 10 1440 > th dose dependent rect. 11 1
443 135.82 temperature 10 1440 > th dose dependent rect. 7 5
449 135.86 temperature 15 720 > th dose dependent sin 17 NA
476 136.00 temperature 15 720 > th dose dependent rect. 16 20
649 136.64 temperature 30 720 < th dose dependent sin 17 NA
651 136.64 temperature 10 720 > th dose dependent rect. 13 23
760 136.95 temperature 30 1440 < th dose dependent rect. 7 1
783 137.00 temperature 15 1440 > th dose dependent rect. 7 1
808 137.03 temperature 10 1440 > th dose dependent sin 3 NA
881 137.20 humidity 60 43200 > th dose independent rect. 14 18
895 137.23 humidity 70 43200 < th dose dependent rect. 17 2
952 137.35 temperature 20 90 < th dose independent rect. 2 23
960 137.37 humidity 70 43200 < th dose independent rect. 17 15
972 137.40 temperature 25 1440 < th dose dependent sin 3 NA
999 137.44 radiation 30 14400 < th dose independent rect. 16 16