Os01g0883000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0883000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.09 | 0.399 | 9.64 | 1.94 | 1.88 | -1.27 | -0.348 | 4.5 | 0.409 | 0.365 | 23.72 | 790 | -- | -- |
| 79.7 | 0.419 | 9.73 | 1.03 | 1.34 | -1 | -0.235 | -- | 0.204 | 0.622 | 22.66 | 799 | -- | -- |
| 72.57 | 0.397 | 9.64 | 1.91 | 1.87 | -1.27 | -- | 4.28 | 0.401 | 0.361 | 23.76 | 791 | -- | -- |
| 79.71 | 0.419 | 9.73 | 1.04 | 1.35 | -1 | -- | -- | 0.21 | 0.645 | 22.23 | 2159 | -- | -- |
| 151.16 | 0.576 | 9.61 | 1.77 | -- | -2.4 | -- | 2.72 | 0.566 | -- | 20.99 | 10 | -- | -- |
| 95.83 | 0.459 | 9.76 | 0.839 | 1.7 | -- | -0.0234 | -- | 0.0497 | 1.07 | -- | -- | -- | -- |
| 95.84 | 0.458 | 9.76 | 0.839 | 1.7 | -- | -- | -- | 0.0498 | 1.07 | -- | -- | -- | -- |
| 157.81 | 0.588 | 9.65 | 1.34 | -- | -2.25 | -- | -- | 0.445 | -- | 20.06 | 12 | -- | -- |
| 106.45 | 0.483 | 9.76 | -- | 1.47 | -0.682 | -- | -- | 0.0499 | 0.834 | 22.23 | 2159 | -- | -- |
| 274.92 | 0.775 | 9.74 | 0.904 | -- | -- | -- | -- | 0.0832 | -- | -- | -- | -- | -- |
| 114.41 | 0.5 | 9.78 | -- | 1.71 | -- | -- | -- | -0.0437 | 1.09 | -- | -- | -- | -- |
| 202.28 | 0.665 | 9.7 | -- | -- | -1.98 | -- | -- | 0.252 | -- | 20.86 | 9 | -- | -- |
| 296.47 | 0.804 | 9.76 | -- | -- | -- | -- | -- | -0.0171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.53 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 5 | 71.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 15 | 71.69 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 30 | 72.21 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 32 | 72.22 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 41 | 72.30 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 42 | 72.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 43 | 72.36 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 45 | 72.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 48 | 72.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 51 | 72.44 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 53 | 72.46 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 60 | 72.56 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 20 |
| 65 | 72.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 66 | 72.61 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 67 | 72.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 100 | 72.76 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 18 |
| 145 | 72.86 | temperature | 25 | 720 | > th | dose dependent | sin | 21 | NA |
| 146 | 72.86 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 13 |
| 152 | 72.88 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 162 | 72.90 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 22 |
| 179 | 72.95 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 185 | 72.96 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 203 | 72.99 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 216 | 73.04 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 218 | 73.05 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 246 | 73.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 276 | 73.20 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 16 |
| 306 | 73.29 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 308 | 73.31 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 309 | 73.31 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 18 |
| 330 | 73.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 334 | 73.35 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 336 | 73.35 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 337 | 73.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 338 | 73.36 | radiation | 40 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 339 | 73.36 | radiation | 40 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 344 | 73.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 346 | 73.37 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 360 | 73.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 377 | 73.43 | radiation | 40 | 43200 | > th | dose dependent | sin | 10 | NA |
| 403 | 73.46 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 457 | 73.47 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 483 | 73.51 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 489 | 73.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 510 | 73.55 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 523 | 73.58 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 536 | 73.64 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 538 | 73.64 | radiation | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 609 | 73.72 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 628 | 73.76 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 651 | 73.77 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 22 |
| 704 | 73.79 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 714 | 73.80 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 13 |
| 738 | 73.83 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 770 | 73.85 | radiation | 20 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 773 | 73.86 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 783 | 73.86 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 802 | 73.88 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 804 | 73.88 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 808 | 73.89 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 835 | 73.91 | radiation | 40 | 43200 | < th | dose independent | sin | 8 | NA |
| 842 | 73.92 | wind | 5 | 43200 | < th | dose independent | sin | 20 | NA |
| 853 | 73.93 | wind | 5 | 43200 | > th | dose independent | sin | 20 | NA |
| 893 | 73.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 973 | 74.05 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |