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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0882000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0466) R2 : 0.248
β1 : -1.28 (0.173) R2dD : 0.0993 R2D : 0.14
β2 : 0.963 (0.156) R2dC : 0.107 R2C : -0.068
β3 : -1.88 (0.248) R2dE : 0.172 R2E : 0.0299
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.147 (0.101) R2dN8 : 0.00497 R2N8 : 0.00086
σ : 0.858
deviance : 339.18
__
_____
C
peak time of C : 6.05
E
wheather : wind
threshold : 8.8
memory length : 1441
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.92
open length of G : 7.06

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
336.02 0.861 3.46 -1.21 0.827 -1.54 -0.975 2.03 0.143 6.15 8.897 1442 2.91 7.01
339.06 0.858 3.46 -1.28 0.963 -1.88 -0.225 -- 0.147 6.05 8.883 1441 2.9 7.08
339.35 0.858 3.46 -1.21 1 -1.54 -- 2.03 0.143 6.15 8.897 1442 2.91 7.01
339.18 0.858 3.46 -1.28 0.963 -1.88 -- -- 0.147 6.05 8.8 1441 2.92 7.06
355.33 0.878 3.48 -1.31 -- -0.855 -- 2.26 0.0938 -- 8.376 1440 2.77 7.05
380.31 0.914 3.53 -1.59 0.214 -- -0.315 -- -0.0694 7.46 -- -- -- --
380.58 0.914 3.53 -1.6 0.215 -- -- -- -0.0691 7.27 -- -- -- --
357.53 0.881 3.48 -1.21 -- -1.43 -- -- 0.141 -- 8.4 1440 2.89 6.93
380.26 0.908 3.43 -- 1.12 -2.31 -- -- 0.312 6.04 8.879 1441 2.92 7.05
383.04 0.915 3.54 -1.59 -- -- -- -- -0.0654 -- -- -- -- --
447.92 0.99 3.49 -- 0.201 -- -- -- 0.109 7.79 -- -- -- --
396.06 0.927 3.48 -- -- -1.77 -- -- 0.219 -- 8.342 1440 3.01 7
450.12 0.99 3.5 -- -- -- -- -- 0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 340.18 wind 9.0 1440 < th dose independent rect. 3 7
6 348.66 wind 3.0 30 < th dose dependent rect. 10 16
8 349.62 atmosphere 1000.0 270 > th dose independent rect. 15 15
9 350.13 wind 3.0 30 < th dose dependent rect. 21 5
10 350.24 atmosphere 1010.0 270 < th dose independent rect. 11 10
13 350.37 atmosphere 995.0 270 > th dose dependent rect. 24 6
15 350.39 atmosphere 1000.0 270 > th dose independent rect. 24 7
17 350.75 wind 1.0 30 < th dose independent rect. 22 4
19 350.89 humidity 70.0 270 > th dose dependent rect. 21 3
22 351.13 wind 1.0 30 < th dose independent rect. 14 12
23 351.14 temperature 15.0 270 > th dose independent rect. 24 21
24 351.15 wind 1.0 30 < th dose independent rect. 22 2
31 351.33 temperature 15.0 270 > th dose independent rect. 11 10
46 351.83 humidity 60.0 270 > th dose dependent rect. 19 6
49 351.93 wind 1.0 30 < th dose independent rect. 10 16
60 352.17 radiation 30.0 10 < th dose independent rect. 2 7
64 352.32 humidity 70.0 90 > th dose independent rect. 2 6
73 352.44 humidity 70.0 10 > th dose independent rect. 2 7
80 352.62 temperature 10.0 270 > th dose dependent rect. 24 7
82 352.74 wind 1.0 30 < th dose dependent rect. 22 2
85 352.86 temperature 30.0 270 < th dose independent rect. 20 15
89 352.97 radiation 40.0 90 < th dose independent rect. 11 11
99 353.17 wind 3.0 30 < th dose dependent rect. 10 14
105 353.33 temperature 15.0 90 > th dose dependent rect. 2 6
108 353.41 wind 1.0 30 < th dose dependent rect. 14 12
113 353.50 humidity 70.0 30 > th dose dependent rect. 22 4
114 353.51 radiation 20.0 30 < th dose independent rect. 2 20
154 354.03 wind 9.0 270 < th dose dependent rect. 21 3
178 354.33 radiation 20.0 30 < th dose independent rect. 4 18
181 354.36 wind 9.0 1440 > th dose independent rect. 9 1
200 354.46 temperature 15.0 90 > th dose independent rect. 3 18
209 354.59 radiation 30.0 10 < th dose independent rect. 4 5
223 354.77 wind 9.0 270 < th dose independent rect. 7 17
226 354.78 humidity 70.0 10 > th dose independent rect. 4 5
227 354.81 atmosphere 1000.0 10 > th dose independent rect. 2 7
228 354.81 humidity 50.0 270 > th dose independent rect. 20 15
231 354.83 temperature 10.0 270 > th dose independent rect. 20 15
232 354.83 atmosphere 995.0 270 > th dose independent rect. 20 15
235 354.87 wind 1.0 30 < th dose independent rect. 10 14
241 354.91 humidity 50.0 90 > th dose dependent rect. 2 7
242 354.92 precipitation 0.1 270 < th dose independent rect. 11 9
244 354.92 precipitation 0.1 270 < th dose dependent rect. 11 9
246 354.95 radiation 20.0 270 < th dose independent rect. 24 7
251 354.98 atmosphere 1015.0 270 < th dose independent rect. 24 21
252 354.98 temperature 10.0 10 > th dose dependent rect. 2 7
265 355.04 humidity 50.0 270 > th dose dependent rect. 24 7
266 355.05 temperature 30.0 30 < th dose independent rect. 9 17
271 355.08 wind 1.0 270 > th dose independent rect. 11 9
282 355.14 temperature 15.0 270 > th dose independent rect. 24 7
283 355.14 precipitation 0.1 270 < th dose independent rect. 20 15
284 355.14 precipitation 0.1 270 < th dose dependent rect. 20 15
285 355.15 atmosphere 1015.0 270 < th dose independent rect. 24 7
288 355.16 radiation 20.0 30 < th dose independent rect. 24 22
290 355.17 wind 9.0 270 < th dose independent rect. 24 7
292 355.17 temperature 30.0 270 < th dose independent rect. 24 7
293 355.17 humidity 50.0 270 > th dose independent rect. 24 7
297 355.17 temperature 10.0 270 > th dose independent rect. 7 17
299 355.20 precipitation 0.1 270 < th dose independent rect. 24 7
300 355.20 precipitation 0.1 270 < th dose dependent rect. 24 7
303 355.25 wind 9.0 270 < th dose independent rect. 20 15
304 355.26 humidity 50.0 270 > th dose independent rect. 7 17
308 355.30 wind 3.0 30 < th dose dependent rect. 8 18
323 355.39 radiation 40.0 270 < th dose dependent rect. 24 7
324 355.41 precipitation 0.1 270 < th dose independent rect. 7 17
325 355.41 precipitation 0.1 270 < th dose dependent rect. 7 17
333 355.46 radiation 40.0 10 < th dose dependent rect. 4 5
343 355.53 atmosphere 995.0 270 > th dose independent rect. 7 17
352 355.57 precipitation 0.1 270 < th dose independent rect. 24 21
353 355.57 precipitation 0.1 270 < th dose dependent rect. 24 21
366 355.69 precipitation 0.1 270 < th dose independent rect. 21 3
367 355.69 precipitation 0.1 270 < th dose dependent rect. 21 3
372 355.74 wind 9.0 270 < th dose independent rect. 21 3
373 355.74 temperature 10.0 270 > th dose independent rect. 21 3
374 355.74 temperature 30.0 270 < th dose independent rect. 21 3
375 355.74 humidity 50.0 270 > th dose independent rect. 21 3
378 355.74 atmosphere 995.0 270 > th dose independent rect. 21 3
379 355.74 radiation 1.0 270 < th dose independent rect. 21 3
385 355.74 radiation 1.0 270 < th dose dependent rect. 21 3
413 355.94 humidity 70.0 270 > th dose independent rect. 19 6
416 355.97 radiation 20.0 90 < th dose independent rect. 11 21
418 355.98 radiation 40.0 90 < th dose dependent rect. 2 20
419 356.00 atmosphere 995.0 270 > th dose independent rect. 11 9
433 356.07 wind 9.0 90 < th dose dependent rect. 2 7
435 356.08 radiation 40.0 30 < th dose dependent rect. 2 7
439 356.11 temperature 25.0 90 > th dose dependent rect. 1 5
454 356.20 wind 9.0 270 < th dose independent rect. 6 19
457 356.22 atmosphere 1000.0 270 > th dose independent rect. 2 3
474 356.31 humidity 50.0 270 > th dose independent rect. 6 19
480 356.36 temperature 15.0 270 > th dose independent rect. 15 15
481 356.37 atmosphere 995.0 270 > th dose independent rect. 6 9
493 356.44 precipitation 0.1 270 < th dose independent rect. 1 18
496 356.44 precipitation 0.1 270 < th dose dependent rect. 1 18
511 356.52 atmosphere 1000.0 10 < th dose independent rect. 24 5
514 356.55 wind 9.0 270 < th dose independent rect. 19 6
516 356.56 temperature 10.0 270 > th dose independent rect. 19 6
517 356.56 temperature 30.0 270 < th dose independent rect. 19 6
518 356.56 humidity 50.0 270 > th dose independent rect. 19 6
519 356.56 atmosphere 995.0 270 > th dose independent rect. 19 6
520 356.56 radiation 1.0 270 < th dose independent rect. 19 6
525 356.56 precipitation 0.1 270 < th dose independent rect. 19 6
527 356.56 atmosphere 1015.0 270 < th dose independent rect. 1 18
528 356.56 radiation 1.0 270 < th dose dependent rect. 19 6
533 356.56 precipitation 0.1 270 < th dose dependent rect. 19 6
541 356.60 temperature 20.0 270 > th dose independent rect. 2 3
544 356.61 temperature 10.0 270 > th dose independent rect. 6 9
545 356.61 atmosphere 1015.0 270 < th dose independent rect. 6 9
555 356.65 temperature 30.0 270 < th dose independent rect. 6 9
558 356.66 wind 9.0 270 < th dose independent rect. 1 5
559 356.66 temperature 10.0 270 > th dose independent rect. 1 5
561 356.66 temperature 30.0 270 < th dose independent rect. 1 5
562 356.66 humidity 50.0 270 > th dose independent rect. 1 5
566 356.66 atmosphere 1015.0 270 < th dose independent rect. 1 5
570 356.66 temperature 10.0 270 > th dose independent rect. 6 19
576 356.69 precipitation 0.1 270 < th dose independent rect. 1 5
577 356.69 precipitation 0.1 270 < th dose dependent rect. 1 5
590 356.75 radiation 40.0 90 < th dose independent rect. 2 20
618 356.79 humidity 50.0 270 > th dose independent rect. 6 9
639 356.82 atmosphere 1010.0 10 < th dose independent rect. 11 11
640 356.82 radiation 20.0 30 < th dose independent rect. 2 11
655 356.89 humidity 50.0 10 > th dose dependent rect. 22 6
662 356.92 precipitation 0.1 270 < th dose independent rect. 15 15
663 356.92 precipitation 0.1 270 < th dose independent rect. 6 19
666 356.92 precipitation 0.1 270 < th dose dependent rect. 15 15
667 356.92 precipitation 0.1 270 < th dose dependent rect. 6 19
671 356.94 atmosphere 995.0 270 > th dose independent rect. 6 19
674 356.94 wind 9.0 270 < th dose dependent rect. 24 7
677 356.95 wind 9.0 270 < th dose independent rect. 11 9
691 356.97 wind 9.0 270 < th dose independent rect. 6 9
727 357.04 humidity 80.0 10 > th dose independent rect. 22 6
735 357.08 atmosphere 995.0 270 > th dose independent rect. 24 21
742 357.10 precipitation 0.1 270 < th dose independent rect. 6 9
746 357.10 precipitation 0.1 270 < th dose dependent rect. 6 9
780 357.17 humidity 80.0 10 > th dose independent rect. 22 4
784 357.17 humidity 60.0 10 > th dose dependent rect. 4 5
812 357.21 atmosphere 1010.0 90 < th dose independent rect. 11 22
815 357.22 wind 1.0 270 > th dose independent rect. 1 5
830 357.27 radiation 40.0 90 < th dose dependent rect. 11 21
832 357.28 wind 9.0 270 < th dose independent rect. 24 21
836 357.29 radiation 30.0 30 < th dose independent rect. 24 9
838 357.30 atmosphere 1015.0 270 < th dose independent rect. 15 15
840 357.31 wind 7.0 1440 > th dose dependent rect. 7 3
849 357.34 precipitation 0.1 10 < th dose independent rect. 22 6
851 357.34 precipitation 0.1 10 < th dose dependent rect. 22 6
855 357.35 atmosphere 1000.0 90 < th dose dependent rect. 23 5
860 357.37 atmosphere 995.0 270 > th dose independent rect. 1 18
863 357.38 wind 9.0 10 < th dose independent rect. 22 6
864 357.38 temperature 10.0 10 > th dose independent rect. 22 6
865 357.38 temperature 30.0 10 < th dose independent rect. 22 6
866 357.38 humidity 50.0 10 > th dose independent rect. 22 6
869 357.38 atmosphere 995.0 10 > th dose independent rect. 22 6
870 357.38 radiation 1.0 10 < th dose independent rect. 22 6
875 357.38 temperature 10.0 10 > th dose independent rect. 4 18
877 357.38 atmosphere 1015.0 10 < th dose independent rect. 4 18
879 357.38 radiation 1.0 10 < th dose dependent rect. 22 6
906 357.46 wind 7.0 10 < th dose independent rect. 2 7
910 357.47 wind 1.0 270 > th dose independent rect. 6 9
912 357.47 radiation 1.0 270 < th dose dependent rect. 2 4
914 357.49 radiation 40.0 270 < th dose independent rect. 15 15
915 357.49 atmosphere 995.0 10 > th dose independent rect. 9 17
916 357.49 atmosphere 995.0 90 > th dose independent rect. 9 17
922 357.50 atmosphere 1000.0 10 > th dose independent rect. 17 15
925 357.51 precipitation 0.1 10 < th dose independent rect. 4 18
928 357.51 precipitation 0.1 10 < th dose dependent rect. 4 18
942 357.52 wind 9.0 90 < th dose independent rect. 9 17
968 357.57 atmosphere 1000.0 270 < th dose independent rect. 23 3
973 357.60 temperature 15.0 1440 > th dose independent rect. 11 1
983 357.61 atmosphere 995.0 10 > th dose dependent rect. 2 7
985 357.62 precipitation 0.1 10 < th dose independent rect. 9 17
986 357.62 precipitation 0.1 10 < th dose dependent rect. 9 17
989 357.63 wind 9.0 10 < th dose independent rect. 9 17
1000 357.64 temperature 10.0 90 > th dose independent rect. 9 17