Os01g0881700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Apocytochrome f precursor.
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Os01g0881700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Apocytochrome f precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.45 | 0.553 | 8.11 | -0.506 | 0.365 | -2.94 | 0.695 | 0.882 | -0.25 | 23.9 | -4.384 | 2210 | -- | -- |
| 139.01 | 0.549 | 8.13 | -0.729 | 0.343 | -2.97 | 0.749 | -- | -0.309 | 23.6 | 8.625 | 2144 | -- | -- |
| 140.28 | 0.552 | 8.1 | -0.5 | 0.338 | -2.98 | -- | 1.08 | -0.242 | 23.1 | -68.95 | 2137 | -- | -- |
| 141.3 | 0.554 | 8.14 | -0.76 | 0.327 | -2.99 | -- | -- | -0.31 | 22.9 | 8.609 | 2105 | -- | -- |
| 144.15 | 0.559 | 8.11 | -0.625 | -- | -3.06 | -- | 0.846 | -0.274 | -- | -59.83 | 1795 | -- | -- |
| 297.45 | 0.809 | 8.26 | -1.78 | 0.0907 | -- | 0.841 | -- | -0.885 | 2.6 | -- | -- | -- | -- |
| 299.91 | 0.811 | 8.26 | -1.8 | 0.1 | -- | -- | -- | -0.89 | 3.71 | -- | -- | -- | -- |
| 144.74 | 0.56 | 8.13 | -0.814 | -- | -3.05 | -- | -- | -0.324 | -- | -47.15 | 1788 | -- | -- |
| 153.91 | 0.578 | 8.11 | -- | 0.39 | -3.27 | -- | -- | -0.175 | 23.3 | 6.896 | 2199 | -- | -- |
| 300.46 | 0.81 | 8.26 | -1.8 | -- | -- | -- | -- | -0.887 | -- | -- | -- | -- | -- |
| 385.67 | 0.919 | 8.21 | -- | 0.0647 | -- | -- | -- | -0.689 | 3.96 | -- | -- | -- | -- |
| 161.24 | 0.591 | 8.11 | -- | -- | -3.1 | -- | -- | -0.21 | -- | 8.018 | 3120 | -- | -- |
| 385.9 | 0.917 | 8.21 | -- | -- | -- | -- | -- | -0.688 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 3 | 132.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 15 |
| 23 | 132.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 27 | 132.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 63 | 133.56 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 88 | 134.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 104 | 134.17 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 120 | 134.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 288 | 136.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 6 |
| 724 | 140.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 913 | 142.09 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |