Os01g0881600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Photosystem II reaction center J protein.
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Os01g0881600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Photosystem II reaction center J protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.1 | 0.355 | 15.8 | -1.32 | 0.39 | -0.886 | 0.304 | 0.52 | -1.02 | 23.5 | 49.93 | 4335 | -- | -- |
| 57.29 | 0.353 | 15.8 | -1.37 | 0.378 | -0.73 | 0.308 | -- | -1.01 | 23.5 | 49.63 | 4407 | -- | -- |
| 57.47 | 0.353 | 15.8 | -1.33 | 0.385 | -0.879 | -- | 0.55 | -1.02 | 23.4 | 50 | 4385 | -- | -- |
| 57.68 | 0.354 | 15.8 | -1.39 | 0.377 | -0.71 | -- | -- | -1.01 | 23.3 | 49.41 | 4402 | -- | -- |
| 66.38 | 0.379 | 15.8 | -1.4 | -- | -0.84 | -- | 0.13 | -0.999 | -- | 49.87 | 4475 | -- | -- |
| 67.09 | 0.384 | 15.8 | -1.67 | 0.346 | -- | 0.217 | -- | -0.933 | 23.3 | -- | -- | -- | -- |
| 67.29 | 0.384 | 15.8 | -1.68 | 0.345 | -- | -- | -- | -0.934 | 23.2 | -- | -- | -- | -- |
| 66.4 | 0.38 | 15.8 | -1.41 | -- | -0.827 | -- | -- | -1 | -- | 50 | 4487 | -- | -- |
| 98.82 | 0.463 | 15.8 | -- | 0.359 | -1.35 | -- | -- | -0.973 | 23.2 | 49 | 4332 | -- | -- |
| 74.75 | 0.404 | 15.8 | -1.67 | -- | -- | -- | -- | -0.931 | -- | -- | -- | -- | -- |
| 141.38 | 0.556 | 15.7 | -- | 0.331 | -- | -- | -- | -0.747 | 22.9 | -- | -- | -- | -- |
| 108.46 | 0.485 | 15.8 | -- | -- | -1.27 | -- | -- | -0.934 | -- | 49.37 | 4376 | -- | -- |
| 148.16 | 0.568 | 15.7 | -- | -- | -- | -- | -- | -0.746 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.94 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 2 | 53.91 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 4 | 54.23 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 5 | 54.39 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 9 | 54.76 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 10 | 54.90 | wind | 3.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 11 | 54.91 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 13 | 55.06 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 15 | 55.07 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 4 | 7 |
| 21 | 55.18 | wind | 3.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 35 | 55.28 | wind | 3.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 91 | 55.63 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 105 | 55.70 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 125 | 55.84 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 21 | 6 |
| 150 | 55.98 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 211 | 56.36 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 224 | 56.41 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 244 | 56.50 | wind | 9.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 253 | 56.53 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 276 | 56.63 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 5 |
| 277 | 56.64 | wind | 9.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 283 | 56.65 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 293 | 56.69 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 302 | 56.72 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 318 | 56.77 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 16 | 22 |
| 327 | 56.79 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 392 | 57.06 | humidity | 50.0 | 4320 | < th | dose independent | sin | 18 | NA |
| 400 | 57.08 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 10 | 7 |
| 428 | 57.11 | humidity | 50.0 | 4320 | < th | dose independent | no | NA | NA |
| 587 | 57.13 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 22 |
| 604 | 57.16 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 607 | 57.18 | wind | 9.0 | 14400 | > th | dose independent | rect. | 3 | 9 |
| 643 | 57.28 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 664 | 57.32 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 18 | 16 |
| 669 | 57.33 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 678 | 57.35 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 680 | 57.35 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 687 | 57.37 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 700 | 57.39 | wind | 9.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 718 | 57.43 | wind | 9.0 | 14400 | < th | dose independent | rect. | 3 | 8 |
| 725 | 57.44 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 745 | 57.46 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 764 | 57.46 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 2 | 2 |
| 789 | 57.48 | wind | 9.0 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 829 | 57.53 | wind | 9.0 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 843 | 57.56 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 854 | 57.57 | humidity | 50.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 911 | 57.62 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 943 | 57.66 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 949 | 57.67 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 951 | 57.68 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 957 | 57.69 | humidity | 50.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 974 | 57.70 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 7 |
| 984 | 57.72 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 7 |
| 986 | 57.72 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 7 |