FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0880900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.91 (0.0383) R2 : 0.822
β1 : 2.33 (0.141) R2dD : 0.111 R2D : 0.11
β2 : 3.99 (0.0982) R2dC : 0.64 R2C : 0.614
β3 : -1.12 (0.0899) R2dE : 0.0643 R2E : 0.0814
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.544 (0.0822) R2dN8 : 0.0229 R2N8 : -0.000371
σ : 0.714
deviance : 235.17
__
_____
C
peak time of C : 19.5
E
wheather : temperature
threshold : 28.7
memory length : 297
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.43
open length of G : 14.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.36 0.704 5.88 2.63 3.9 -0.99 0.491 -1.74 0.621 19.7 28.64 286 4.93 16
235.8 0.715 5.9 2.48 4.08 -0.932 0.667 -- 0.601 19.9 28.61 283 5.68 16.1
222.92 0.695 5.89 2.53 3.76 -1.15 -- -1.57 0.579 19.5 28.49 306 5.02 14.3
235.17 0.714 5.91 2.33 3.99 -1.12 -- -- 0.544 19.5 28.7 297 5.43 14.8
340.63 0.86 5.98 2.31 -- -2.97 -- 1.07 0.134 -- 28.3 384 0.0158 11.9
282 0.787 5.9 2.56 3.95 -- 0.996 -- 0.644 20.3 -- -- -- --
285.04 0.791 5.9 2.53 3.95 -- -- -- 0.645 20.3 -- -- -- --
296.83 0.802 5.78 2.57 -- -3.04 -- -- 0.658 -- 31.4 317 0.183 11.2
373.86 0.901 5.97 -- 3.75 -1.39 -- -- 0.393 19.4 28.5 315 5.47 13.6
1148.07 1.58 5.8 2.5 -- -- -- -- 0.601 -- -- -- -- --
453.59 0.996 5.96 -- 3.94 -- -- -- 0.363 20.3 -- -- -- --
467.23 1.01 5.8 -- -- -2.98 -- -- 0.588 -- 30.6 318 0.189 11.3
1313.04 1.69 5.86 -- -- -- -- -- 0.323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 231.16 temperature 20.0 10 > th dose dependent rect. 12 10
2 231.24 temperature 30.0 270 < th dose independent rect. 5 16
6 231.73 temperature 30.0 270 < th dose dependent rect. 6 15
10 232.27 temperature 20.0 270 > th dose dependent rect. 10 6
21 233.10 temperature 10.0 270 > th dose dependent rect. 10 11
69 235.15 radiation 40.0 270 < th dose independent rect. 6 17
72 235.22 temperature 25.0 10 > th dose dependent rect. 12 17
79 235.39 temperature 10.0 90 > th dose dependent rect. 12 18
108 236.04 temperature 25.0 90 > th dose dependent rect. 11 18
120 236.22 temperature 30.0 270 < th dose dependent sin 22 NA
131 236.54 temperature 25.0 10 > th dose dependent sin 18 NA
174 237.44 temperature 30.0 270 < th dose independent rect. 14 22
187 237.81 temperature 20.0 90 > th dose independent rect. 6 6
198 238.08 temperature 25.0 10 > th dose independent rect. 12 8
201 238.13 temperature 30.0 270 < th dose independent rect. 4 21
208 238.23 radiation 40.0 270 < th dose independent rect. 4 21
222 238.45 wind 7.0 90 < th dose independent rect. 12 18
244 238.89 temperature 25.0 270 > th dose dependent sin 0 NA
253 239.03 temperature 25.0 90 > th dose independent rect. 12 8
277 239.39 temperature 25.0 270 > th dose independent rect. 10 8
284 239.51 temperature 10.0 270 > th dose dependent rect. 10 18
301 239.71 temperature 30.0 270 < th dose independent rect. 4 8
353 240.19 precipitation 0.1 90 < th dose independent rect. 12 18
354 240.19 precipitation 0.1 90 < th dose dependent rect. 12 18
382 240.64 temperature 30.0 270 < th dose independent sin 1 NA
391 240.73 humidity 70.0 270 > th dose independent rect. 6 15
402 240.90 precipitation 0.1 90 < th dose independent rect. 6 6
404 240.90 precipitation 0.1 90 < th dose dependent rect. 6 6
407 240.91 atmosphere 995.0 90 > th dose independent rect. 6 6
408 240.91 atmosphere 1015.0 90 < th dose independent rect. 6 6
409 240.91 temperature 10.0 90 > th dose independent rect. 12 18
421 241.04 humidity 50.0 270 > th dose dependent rect. 6 15
441 241.37 temperature 30.0 10 < th dose dependent sin 19 NA
458 241.60 radiation 40.0 270 < th dose independent rect. 5 7
465 241.69 wind 1.0 90 > th dose independent rect. 6 6
474 241.81 wind 9.0 90 < th dose independent rect. 6 6
484 241.94 temperature 10.0 1440 > th dose independent rect. 7 6
487 241.94 atmosphere 995.0 1440 > th dose independent rect. 7 6
488 241.94 temperature 10.0 1440 > th dose independent rect. 13 18
516 242.09 humidity 90.0 90 < th dose independent rect. 6 6
521 242.13 radiation 1.0 90 > th dose independent rect. 6 6
526 242.18 wind 7.0 270 < th dose independent rect. 9 22
539 242.32 wind 1.0 30 > th dose independent rect. 12 18
557 242.44 temperature 10.0 90 > th dose dependent sin 20 NA
647 243.05 temperature 25.0 270 > th dose dependent rect. 18 22
665 243.23 wind 7.0 270 < th dose independent rect. 10 20
697 243.46 radiation 40.0 270 < th dose dependent rect. 6 17
800 244.15 temperature 10.0 270 > th dose dependent sin 22 NA
874 244.54 humidity 90.0 10 < th dose dependent rect. 12 9
897 244.66 temperature 30.0 720 < th dose independent rect. 21 15
935 244.89 radiation 40.0 270 < th dose independent sin 19 NA
949 244.96 temperature 30.0 270 < th dose dependent rect. 23 6
964 245.04 temperature 30.0 720 < th dose dependent rect. 7 6