Os01g0880400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF231, plant domain containing protein.
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Os01g0880400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF231, plant domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.54 | 0.288 | 10.8 | -0.561 | 1.81 | 1.22 | 1.29 | 0.499 | -0.393 | 4.94 | 29.8 | 251 | -- | -- |
| 37.72 | 0.286 | 10.8 | -0.492 | 1.83 | 1.22 | 1.37 | -- | -0.399 | 4.96 | 30.1 | 221 | -- | -- |
| 40.84 | 0.298 | 10.8 | -0.693 | 1.81 | 1.26 | -- | 1.28 | -0.43 | 4.97 | 30 | 219 | -- | -- |
| 42.64 | 0.304 | 10.8 | -0.466 | 1.8 | 1.28 | -- | -- | -0.386 | 5.01 | 30.6 | 194 | -- | -- |
| 161.74 | 0.592 | 10.8 | -0.269 | -- | 2.89 | -- | 1.59 | -0.165 | -- | 31.62 | 240 | -- | -- |
| 57 | 0.354 | 10.8 | -0.777 | 2.18 | -- | 1.56 | -- | -0.613 | 4.84 | -- | -- | -- | -- |
| 63.29 | 0.373 | 10.8 | -0.783 | 2.19 | -- | -- | -- | -0.621 | 4.8 | -- | -- | -- | -- |
| 164.42 | 0.597 | 10.8 | -0.0446 | -- | 3.07 | -- | -- | -0.102 | -- | 32.59 | 243 | -- | -- |
| 47.84 | 0.322 | 10.8 | -- | 1.74 | 1.48 | -- | -- | -0.297 | 5.04 | 30.45 | 200 | -- | -- |
| 317.82 | 0.833 | 10.9 | -0.701 | -- | -- | -- | -- | -0.564 | -- | -- | -- | -- | -- |
| 79.44 | 0.417 | 10.8 | -- | 2.18 | -- | -- | -- | -0.533 | 4.81 | -- | -- | -- | -- |
| 164.43 | 0.597 | 10.8 | -- | -- | 3.06 | -- | -- | -0.0945 | -- | 32.57 | 241 | -- | -- |
| 330.78 | 0.849 | 10.9 | -- | -- | -- | -- | -- | -0.486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 4 | 36.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 12 | 37.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 14 | 37.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 22 | 37.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 24 | 37.73 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 31 | 37.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 73 | 38.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 75 | 38.83 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 85 | 38.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 100 | 39.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 118 | 39.30 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 126 | 39.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 152 | 39.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 169 | 39.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 195 | 39.81 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 200 | 39.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 218 | 39.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 256 | 40.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 267 | 40.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 280 | 40.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 300 | 40.22 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 380 | 40.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 390 | 40.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 395 | 40.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 418 | 40.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 430 | 40.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 460 | 40.73 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 497 | 40.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 4 |
| 508 | 40.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 512 | 40.86 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 598 | 41.05 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 602 | 41.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 785 | 41.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 810 | 41.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 17 |
| 850 | 41.43 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 20 |