Os01g0879800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Retrotransposon gag protein family protein.
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Os01g0879800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Retrotransposon gag protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.56 | 0.713 | 3.23 | -0.64 | 0.286 | -0.353 | -0.0226 | -2.42 | -0.0881 | 12.2 | 20.04 | 802 | -- | -- |
| 233.66 | 0.712 | 3.16 | -0.0953 | 0.272 | -0.469 | 0.408 | -- | 0.0581 | 10.7 | 22.41 | 1037 | -- | -- |
| 230.56 | 0.707 | 3.23 | -0.637 | 0.286 | -0.353 | -- | -2.41 | -0.0872 | 12.2 | 20.05 | 802 | -- | -- |
| 234.26 | 0.713 | 3.16 | -0.07 | 0.259 | -0.494 | -- | -- | 0.0669 | 11.5 | 22.72 | 978 | -- | -- |
| 234.99 | 0.714 | 3.22 | -0.562 | -- | -0.499 | -- | -2.15 | -0.0506 | -- | 20.62 | 853 | -- | -- |
| 239.89 | 0.726 | 3.18 | -0.235 | 0.383 | -- | 0.484 | -- | -0.0246 | 11 | -- | -- | -- | -- |
| 240.84 | 0.727 | 3.18 | -0.214 | 0.38 | -- | -- | -- | -0.0222 | 11.3 | -- | -- | -- | -- |
| 237.67 | 0.718 | 3.17 | -0.0499 | -- | -0.646 | -- | -- | 0.056 | -- | 24 | 939 | -- | -- |
| 234.38 | 0.713 | 3.16 | -- | 0.252 | -0.516 | -- | -- | 0.0751 | 11.5 | 22.57 | 977 | -- | -- |
| 249.89 | 0.739 | 3.19 | -0.223 | -- | -- | -- | -- | -0.0258 | -- | -- | -- | -- | -- |
| 242.05 | 0.728 | 3.17 | -- | 0.382 | -- | -- | -- | 0.00158 | 11.3 | -- | -- | -- | -- |
| 237.73 | 0.718 | 3.17 | -- | -- | -0.657 | -- | -- | 0.0624 | -- | 24 | 940 | -- | -- |
| 251.21 | 0.74 | 3.18 | -- | -- | -- | -- | -- | -0.000987 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.81 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 12 | 18 |
| 2 | 224.81 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 18 |
| 9 | 225.33 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 4 | 8 |
| 68 | 226.88 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 99 | 227.42 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 116 | 227.74 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 10 | 2 |
| 125 | 227.81 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 131 | 227.90 | wind | 1.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 132 | 227.91 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 24 | 1 |
| 166 | 228.11 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 12 | 21 |
| 175 | 228.21 | wind | 1.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 177 | 228.22 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 198 | 228.44 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 199 | 228.45 | radiation | 40.0 | 90 | > th | dose independent | rect. | 10 | 2 |
| 212 | 228.57 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 227 | 228.72 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 242 | 228.79 | humidity | 60.0 | 10 | < th | dose independent | rect. | 12 | 1 |
| 247 | 228.81 | radiation | 40.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 282 | 229.04 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 293 | 229.09 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 7 |
| 302 | 229.14 | temperature | 10.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 338 | 229.27 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 380 | 229.40 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 385 | 229.43 | temperature | 15.0 | 270 | > th | dose dependent | sin | 14 | NA |
| 388 | 229.44 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 394 | 229.47 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 436 | 229.54 | temperature | 30.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 457 | 229.59 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 20 |
| 466 | 229.62 | temperature | 30.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 517 | 229.73 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 16 | 21 |
| 584 | 229.90 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 7 |
| 606 | 229.97 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 607 | 229.97 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 616 | 229.99 | temperature | 20.0 | 10 | > th | dose dependent | sin | 13 | NA |
| 627 | 230.01 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 1 |
| 631 | 230.01 | wind | 7.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 632 | 230.01 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 642 | 230.02 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 657 | 230.03 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 784 | 230.24 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 790 | 230.25 | humidity | 90.0 | 10 | < th | dose independent | rect. | 1 | 12 |
| 817 | 230.28 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 835 | 230.31 | wind | 7.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 837 | 230.31 | wind | 3.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 852 | 230.34 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 853 | 230.34 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 864 | 230.36 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 9 |
| 878 | 230.38 | wind | 1.0 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 884 | 230.39 | wind | 1.0 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 890 | 230.40 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 10 | 2 |
| 892 | 230.40 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 17 | 20 |
| 901 | 230.42 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 934 | 230.45 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 23 | 14 |
| 951 | 230.47 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 959 | 230.47 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 1 | 12 |