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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0879200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.65 (0.0527) R2 : 0.621
β1 : 5.36 (0.266) R2dD : 0.682 R2D : -0.362
β2 : 1.82 (0.128) R2dC : 0.175 R2C : 0.116
β3 : -2.88 (0.209) R2dE : 0.178 R2E : 0.0205
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -15.4 (0.959) R2dD*E : 0.453 R2D*E : -0.275
γ1 : 1.5 (0.11) R2dN8 : 0.191 R2N8 : 0.0529
σ : 0.959
deviance : 424.34
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_____
C
peak time of C : 15.1
E
wheather : radiation
threshold : 1.195
memory length : 4324
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 6.01

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
423.86 0.959 4.64 5.44 1.86 -2.83 0.76 -15.7 1.46 15.1 1 4320 18 6
773.86 1.31 4.46 1.79 1.65 -0.675 0.131 -- 1.32 16.6 1 4320 18 6
424.34 0.959 4.65 5.36 1.82 -2.88 -- -15.4 1.5 15.1 1.195 4324 18 6.01
484.91 1.03 4.62 0.511 1.83 -2.86 -- -- 0.219 14.9 0.6206 47520 18 5.32
608.67 1.15 4.62 5 -- -2.92 -- -15.3 1.4 -- 1.319 4330 17.9 8
789.94 1.32 4.44 1.8 1.63 -- 0.319 -- 1.35 15.1 -- -- -- --
790.27 1.32 4.44 1.81 1.63 -- -- -- 1.35 15.2 -- -- -- --
655.32 1.19 4.7 0.649 -- -2.94 -- -- 0.18 -- 1.31 47520 18 8.11
484.97 1.03 4.73 -- 1.73 -3.13 -- -- 0.0545 15.1 0.6044 47520 18 5.98
941.18 1.43 4.44 1.74 -- -- -- -- 1.31 -- -- -- -- --
876.33 1.38 4.48 -- 1.59 -- -- -- 1.15 15.1 -- -- -- --
657.5 1.19 4.7 -- -- -2.98 -- -- 0.0946 -- 0.6 47520 18 8.87
1020.83 1.49 4.48 -- -- -- -- -- 1.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 405.43 temperature 30.0 14400 < th dose independent rect. 15 3
2 407.16 temperature 30.0 14400 > th dose independent rect. 15 3
5 409.19 temperature 30.0 14400 < th dose independent rect. 15 18
6 409.60 temperature 30.0 14400 < th dose independent rect. 15 9
7 409.65 temperature 30.0 14400 < th dose independent rect. 15 6
14 409.69 temperature 30.0 14400 < th dose independent rect. 15 15
16 409.71 temperature 30.0 14400 < th dose independent rect. 15 13
20 409.98 temperature 30.0 14400 > th dose independent rect. 15 18
105 412.67 temperature 30.0 14400 < th dose independent sin 14 NA
111 413.23 temperature 30.0 14400 > th dose independent sin 14 NA
162 415.64 temperature 25.0 14400 > th dose dependent rect. 14 17
164 415.76 temperature 25.0 14400 > th dose dependent rect. 14 14
188 416.87 radiation 1.0 14400 < th dose independent rect. 18 6
206 417.30 radiation 1.0 14400 < th dose independent rect. 18 8
225 417.45 precipitation 0.1 43200 > th dose dependent rect. 2 18
226 417.50 temperature 25.0 14400 > th dose dependent sin 15 NA
228 417.56 radiation 1.0 14400 < th dose independent rect. 18 10
252 417.95 temperature 25.0 14400 > th dose dependent rect. 15 4
379 420.91 precipitation 0.1 43200 > th dose dependent rect. 23 21
399 421.19 radiation 1.0 14400 > th dose independent rect. 18 1
441 421.62 temperature 30.0 14400 < th dose independent rect. 5 13
442 421.62 temperature 30.0 14400 < th dose independent rect. 3 15
443 421.62 temperature 30.0 14400 < th dose independent rect. 19 23
444 421.63 temperature 30.0 14400 < th dose independent rect. 7 11
451 421.64 temperature 30.0 14400 < th dose independent rect. 22 20
460 421.72 temperature 30.0 14400 > th dose independent rect. 8 10
497 422.26 temperature 25.0 14400 > th dose dependent rect. 20 23
498 422.27 temperature 25.0 14400 > th dose dependent no NA NA
499 422.29 temperature 25.0 14400 > th dose dependent rect. 5 23
525 422.53 temperature 30.0 14400 < th dose independent rect. 5 19
526 422.53 temperature 30.0 14400 < th dose independent rect. 3 21
532 422.55 temperature 30.0 14400 < th dose independent rect. 5 16
533 422.55 temperature 30.0 14400 < th dose independent rect. 7 17
534 422.55 temperature 30.0 14400 < th dose independent rect. 3 18
538 422.55 temperature 30.0 14400 < th dose independent rect. 1 23
567 422.58 temperature 30.0 14400 < th dose independent no NA NA
587 422.58 temperature 30.0 14400 < th dose independent rect. 7 23
653 422.77 temperature 30.0 14400 > th dose independent no NA NA
780 422.97 temperature 25.0 14400 > th dose dependent rect. 17 23
880 424.21 radiation 1.0 4320 < th dose dependent rect. 18 6
893 424.33 temperature 30.0 14400 < th dose independent rect. 17 23
908 424.64 temperature 30.0 14400 > th dose independent rect. 17 23
912 424.75 radiation 1.0 4320 < th dose dependent rect. 18 3
915 424.79 radiation 1.0 4320 < th dose dependent rect. 18 8
936 425.20 radiation 1.0 14400 > th dose independent rect. 18 14
941 425.28 radiation 1.0 4320 < th dose dependent rect. 18 10
963 425.79 humidity 90.0 43200 < th dose independent rect. 17 1
970 426.08 precipitation 0.1 43200 > th dose dependent rect. 16 18
989 426.52 precipitation 0.1 43200 > th dose dependent rect. 13 19