Os01g0879000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0879000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.66 | 0.442 | 10.4 | 0.519 | 0.843 | 0.91 | -0.792 | 1.77 | 0.106 | 19.6 | 21.14 | 35 | -- | -- |
| 90.35 | 0.443 | 10.4 | 0.267 | 0.84 | 1.03 | -1.04 | -- | 0.0741 | 19.8 | 24.08 | 5 | -- | -- |
| 90.38 | 0.443 | 10.4 | 0.567 | 0.848 | 0.868 | -- | 1.88 | 0.117 | 19.5 | 21.03 | 33 | -- | -- |
| 92.53 | 0.448 | 10.4 | 0.28 | 0.813 | 1.05 | -- | -- | 0.0555 | 19.8 | 24.1 | 18 | -- | -- |
| 119.35 | 0.509 | 10.4 | 0.363 | -- | 1.2 | -- | 1.06 | 0.0179 | -- | 20.46 | 278 | -- | -- |
| 109.07 | 0.49 | 10.4 | 0.455 | 1.02 | -- | -0.212 | -- | 0.188 | 18.3 | -- | -- | -- | -- |
| 109.17 | 0.489 | 10.4 | 0.458 | 1.02 | -- | -- | -- | 0.187 | 18.2 | -- | -- | -- | -- |
| 118.48 | 0.507 | 10.4 | 0.249 | -- | 1.21 | -- | -- | 0.0353 | -- | 24.1 | 252 | -- | -- |
| 94.58 | 0.453 | 10.4 | -- | 0.796 | 1.1 | -- | -- | 0.0296 | 19.9 | 24.1 | 18 | -- | -- |
| 163.54 | 0.598 | 10.4 | 0.43 | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
| 114.69 | 0.501 | 10.4 | -- | 1.02 | -- | -- | -- | 0.136 | 18.3 | -- | -- | -- | -- |
| 119.63 | 0.509 | 10.4 | -- | -- | 1.29 | -- | -- | 0.00929 | -- | 24.1 | 263 | -- | -- |
| 168.41 | 0.606 | 10.4 | -- | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.26 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 19 | 80.09 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 55 | 82.52 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 9 |
| 60 | 82.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 61 | 82.73 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 18 |
| 76 | 83.09 | temperature | 20 | 90 | > th | dose dependent | sin | 3 | NA |
| 84 | 83.25 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 104 | 83.84 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 111 | 84.06 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 6 | 22 |
| 114 | 84.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 149 | 84.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 166 | 85.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 194 | 85.36 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 212 | 85.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 217 | 85.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 229 | 85.72 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 17 | 13 |
| 259 | 86.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 283 | 86.27 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 292 | 86.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 322 | 86.56 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 342 | 86.73 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 345 | 86.76 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 355 | 86.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 19 |
| 358 | 86.83 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 372 | 86.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 376 | 86.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 403 | 87.12 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 407 | 87.20 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 16 |
| 422 | 87.31 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 443 | 87.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 466 | 87.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 517 | 87.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 553 | 87.99 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 581 | 88.11 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 629 | 88.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 646 | 88.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 665 | 88.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 700 | 88.62 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 10 |
| 724 | 88.72 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 737 | 88.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 770 | 88.90 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 778 | 88.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 781 | 88.94 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 785 | 88.95 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 801 | 89.00 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 811 | 89.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 830 | 89.09 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 11 | 19 |
| 849 | 89.17 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 882 | 89.26 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 16 |
| 900 | 89.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 920 | 89.41 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 15 |
| 971 | 89.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 975 | 89.56 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 13 |
| 981 | 89.57 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 16 |