Os01g0878900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 4,5-DOPA dioxygenase extradiol-like protein.
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Os01g0878900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 4,5-DOPA dioxygenase extradiol-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 764.67 | 1.3 | 4.91 | -1.01 | 0.797 | 2.92 | -0.392 | -1.43 | -0.455 | 17.6 | 23.85 | 1369 | -- | -- |
| 764.32 | 1.29 | 4.95 | -1.19 | 0.797 | 3.4 | -0.404 | -- | -0.545 | 17.6 | 22.8 | 1349 | -- | -- |
| 763.86 | 1.29 | 4.93 | -1.07 | 0.793 | 3.18 | -- | -1.05 | -0.522 | 17.5 | 22.92 | 1365 | -- | -- |
| 764.68 | 1.29 | 4.95 | -1.19 | 0.795 | 3.41 | -- | -- | -0.55 | 17.5 | 22.77 | 1359 | -- | -- |
| 796.33 | 1.31 | 4.92 | -1.09 | -- | 3.28 | -- | -0.873 | -0.526 | -- | 22.98 | 1307 | -- | -- |
| 884.66 | 1.39 | 5.07 | -2.14 | 0.89 | -- | -0.629 | -- | -1.08 | 17.3 | -- | -- | -- | -- |
| 885.59 | 1.39 | 5.07 | -2.14 | 0.886 | -- | -- | -- | -1.08 | 17.2 | -- | -- | -- | -- |
| 797.03 | 1.31 | 4.94 | -1.19 | -- | 3.48 | -- | -- | -0.554 | -- | 22.8 | 1307 | -- | -- |
| 794.74 | 1.31 | 4.9 | -- | 0.834 | 4.32 | -- | -- | -0.36 | 17.4 | 22.28 | 1410 | -- | -- |
| 926.65 | 1.42 | 5.06 | -2.17 | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
| 1006.11 | 1.48 | 5.02 | -- | 0.923 | -- | -- | -- | -0.841 | 17.1 | -- | -- | -- | -- |
| 806.73 | 1.32 | 4.9 | -- | -- | 4.09 | -- | -- | -0.397 | -- | 20.49 | 2762 | -- | -- |
| 1050.83 | 1.51 | 5.01 | -- | -- | -- | -- | -- | -0.861 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 756.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 9 | 757.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 20 | 759.52 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 188 | 768.48 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 199 | 768.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 17 |
| 200 | 768.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 210 | 769.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 228 | 769.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 322 | 771.65 | temperature | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 355 | 772.30 | temperature | 20 | 1440 | > th | dose independent | sin | 16 | NA |
| 489 | 774.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 493 | 775.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 525 | 775.60 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 570 | 776.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 585 | 776.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 591 | 776.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 593 | 776.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 606 | 776.76 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 621 | 776.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 623 | 776.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 627 | 777.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 635 | 777.12 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 640 | 777.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 800 | 778.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 6 |
| 820 | 778.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 852 | 778.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 954 | 779.50 | humidity | 90 | 4320 | > th | dose dependent | rect. | 12 | 2 |