Os01g0878300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0878300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.95 | 0.714 | 8.9 | -1.14 | 1.87 | -1.19 | 2.44 | 1.06 | -0.634 | 10.2 | 83.54 | 20 | -- | -- |
| 234.28 | 0.713 | 8.91 | -1.08 | 1.87 | -1.16 | 2.23 | -- | -0.626 | 10.1 | 83.5 | 20 | -- | -- |
| 250.44 | 0.737 | 8.92 | -0.988 | 1.76 | -1.34 | -- | 0.0833 | -0.677 | 9.86 | 83 | 20 | -- | -- |
| 250.02 | 0.736 | 8.91 | -0.988 | 1.82 | -1.26 | -- | -- | -0.628 | 9.95 | 83.16 | 20 | -- | -- |
| 418.58 | 0.958 | 8.95 | -1.03 | -- | -1.67 | -- | -0.347 | -0.601 | -- | 77 | 10 | -- | -- |
| 276.34 | 0.779 | 8.86 | -1.21 | 2.19 | -- | 2.23 | -- | -0.396 | 11.3 | -- | -- | -- | -- |
| 297.75 | 0.808 | 8.85 | -1.12 | 2.18 | -- | -- | -- | -0.387 | 11.4 | -- | -- | -- | -- |
| 418.58 | 0.957 | 8.95 | -1.04 | -- | -1.69 | -- | -- | -0.599 | -- | 76.87 | 13 | -- | -- |
| 275.22 | 0.773 | 8.89 | -- | 1.83 | -1.35 | -- | -- | -0.549 | 9.92 | 83.83 | 20 | -- | -- |
| 594.87 | 1.14 | 8.91 | -1.18 | -- | -- | -- | -- | -0.409 | -- | -- | -- | -- | -- |
| 330.96 | 0.851 | 8.83 | -- | 2.19 | -- | -- | -- | -0.262 | 11.4 | -- | -- | -- | -- |
| 446.94 | 0.988 | 8.93 | -- | -- | -1.73 | -- | -- | -0.505 | -- | 77.91 | 14 | -- | -- |
| 631.55 | 1.17 | 8.88 | -- | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 226.94 | humidity | 80 | 90 | > th | dose dependent | rect. | 10 | 19 |
| 4 | 228.28 | humidity | 80 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 11 | 230.00 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 16 |
| 18 | 231.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 20 | 232.50 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 6 |
| 24 | 232.84 | humidity | 80 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 29 | 233.29 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 8 |
| 33 | 233.51 | humidity | 90 | 30 | < th | dose independent | rect. | 1 | 22 |
| 34 | 233.59 | humidity | 90 | 30 | < th | dose independent | rect. | 1 | 20 |
| 46 | 234.42 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 51 | 234.65 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 66 | 235.25 | humidity | 80 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 70 | 235.36 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 76 | 235.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 106 | 235.92 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 6 |
| 113 | 236.01 | humidity | 80 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 114 | 236.01 | humidity | 80 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 116 | 236.06 | humidity | 80 | 10 | > th | dose dependent | no | NA | NA |
| 117 | 236.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 119 | 236.08 | humidity | 80 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 128 | 236.17 | humidity | 80 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 133 | 236.27 | humidity | 80 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 152 | 236.88 | humidity | 90 | 30 | > th | dose independent | rect. | 11 | 20 |
| 159 | 237.08 | humidity | 80 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 173 | 237.24 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 9 |
| 174 | 237.24 | humidity | 90 | 90 | < th | dose independent | rect. | 17 | 15 |
| 200 | 237.64 | humidity | 90 | 30 | > th | dose independent | rect. | 8 | 23 |
| 201 | 237.65 | humidity | 90 | 10 | < th | dose independent | rect. | 5 | 23 |
| 234 | 237.98 | humidity | 80 | 30 | > th | dose dependent | sin | 9 | NA |
| 248 | 238.17 | humidity | 80 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 252 | 238.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 6 |
| 256 | 238.31 | humidity | 80 | 90 | > th | dose dependent | rect. | 17 | 12 |
| 259 | 238.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 6 |
| 263 | 238.37 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 7 |
| 281 | 238.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 315 | 238.93 | humidity | 90 | 30 | < th | dose independent | no | NA | NA |
| 320 | 239.00 | humidity | 90 | 30 | < th | dose independent | rect. | 3 | 23 |
| 343 | 239.19 | humidity | 80 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 388 | 239.51 | humidity | 90 | 30 | < th | dose independent | rect. | 22 | 23 |
| 389 | 239.53 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 390 | 239.55 | humidity | 90 | 30 | > th | dose independent | rect. | 22 | 22 |
| 411 | 239.74 | humidity | 90 | 30 | < th | dose independent | rect. | 9 | 23 |
| 412 | 239.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 420 | 239.81 | humidity | 90 | 30 | > th | dose independent | rect. | 1 | 23 |
| 442 | 240.05 | humidity | 90 | 30 | < th | dose independent | rect. | 17 | 23 |
| 448 | 240.10 | humidity | 90 | 30 | > th | dose independent | no | NA | NA |
| 450 | 240.10 | humidity | 90 | 30 | > th | dose independent | rect. | 13 | 23 |
| 451 | 240.10 | humidity | 90 | 30 | > th | dose independent | rect. | 15 | 23 |
| 452 | 240.10 | humidity | 90 | 30 | > th | dose independent | rect. | 17 | 23 |
| 456 | 240.11 | humidity | 90 | 30 | > th | dose independent | rect. | 17 | 21 |
| 465 | 240.14 | humidity | 90 | 30 | > th | dose independent | rect. | 19 | 23 |
| 487 | 240.31 | humidity | 90 | 30 | < th | dose independent | rect. | 15 | 23 |
| 530 | 240.65 | humidity | 90 | 10 | < th | dose independent | rect. | 5 | 16 |
| 535 | 240.67 | humidity | 90 | 30 | > th | dose independent | rect. | 17 | 19 |
| 541 | 240.71 | humidity | 80 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 580 | 241.06 | humidity | 90 | 30 | < th | dose independent | rect. | 17 | 20 |
| 584 | 241.10 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 591 | 241.13 | humidity | 90 | 10 | < th | dose independent | rect. | 5 | 18 |
| 605 | 241.21 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 757 | 242.00 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 18 |
| 816 | 242.29 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 11 |
| 824 | 242.33 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 846 | 242.46 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 849 | 242.47 | temperature | 20 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 876 | 242.55 | humidity | 90 | 30 | > th | dose independent | sin | 8 | NA |
| 912 | 242.66 | temperature | 20 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 986 | 242.96 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 23 |