Os01g0878100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0878100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.72 | 0.321 | 11.6 | 0.338 | 0.5 | 0.762 | -0.251 | -0.0379 | -0.0274 | 20.6 | 18.32 | 9 | -- | -- |
| 46.04 | 0.318 | 11.6 | 0.35 | 0.523 | 0.726 | -0.283 | -- | -0.0301 | 21 | 18.32 | 9 | -- | -- |
| 46.01 | 0.318 | 11.6 | 0.352 | 0.533 | 0.714 | -- | -0.236 | -0.0306 | 21.1 | 18.32 | 9 | -- | -- |
| 46.31 | 0.319 | 11.6 | 0.359 | 0.535 | 0.711 | -- | -- | -0.0302 | 21.1 | 18.32 | 9 | -- | -- |
| 54.21 | 0.343 | 11.6 | 0.318 | -- | 0.976 | -- | -0.157 | 0.00505 | -- | 11.9 | 10 | -- | -- |
| 56.47 | 0.352 | 11.7 | 0.325 | 1.18 | -- | -0.0678 | -- | -0.0365 | 22.7 | -- | -- | -- | -- |
| 56.49 | 0.352 | 11.7 | 0.327 | 1.18 | -- | -- | -- | -0.0364 | 22.7 | -- | -- | -- | -- |
| 53.69 | 0.341 | 11.6 | 0.317 | -- | 0.972 | -- | -- | -0.0261 | -- | 10.93 | 6 | -- | -- |
| 49.7 | 0.33 | 11.6 | -- | 0.551 | 0.69 | -- | -- | -0.0702 | 21.2 | 18.32 | 9 | -- | -- |
| 143.12 | 0.559 | 11.6 | 0.35 | -- | -- | -- | -- | -0.0298 | -- | -- | -- | -- | -- |
| 59.31 | 0.36 | 11.7 | -- | 1.19 | -- | -- | -- | -0.0728 | 22.7 | -- | -- | -- | -- |
| 56.25 | 0.349 | 11.6 | -- | -- | 0.971 | -- | -- | -0.0613 | -- | 10.32 | 4 | -- | -- |
| 146.36 | 0.565 | 11.6 | -- | -- | -- | -- | -- | -0.0687 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.38 | humidity | 70 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 3 | 45.51 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 15 |
| 4 | 45.56 | radiation | 10 | 10 | < th | dose dependent | sin | 1 | NA |
| 14 | 45.74 | humidity | 70 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 15 | 45.74 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 34 | 46.01 | humidity | 70 | 10 | > th | dose dependent | sin | 2 | NA |
| 93 | 46.54 | radiation | 20 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 118 | 46.68 | radiation | 1 | 90 | < th | dose independent | sin | 1 | NA |
| 120 | 46.68 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 127 | 46.74 | radiation | 20 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 129 | 46.77 | humidity | 90 | 30 | < th | dose independent | rect. | 20 | 19 |
| 135 | 46.78 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 141 | 46.81 | radiation | 1 | 90 | > th | dose independent | sin | 2 | NA |
| 149 | 46.84 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 163 | 46.94 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 171 | 46.97 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 175 | 47.00 | radiation | 10 | 10 | < th | dose dependent | rect. | 3 | 14 |
| 180 | 47.04 | radiation | 20 | 90 | < th | dose dependent | rect. | 2 | 15 |
| 187 | 47.10 | humidity | 80 | 90 | > th | dose independent | rect. | 1 | 16 |
| 203 | 47.16 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 231 | 47.26 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 14 |
| 264 | 47.34 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 278 | 47.38 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 11 |
| 366 | 47.55 | humidity | 90 | 10 | < th | dose dependent | sin | 5 | NA |
| 383 | 47.58 | radiation | 1 | 90 | < th | dose independent | rect. | 2 | 17 |
| 414 | 47.65 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 623 | 48.04 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 10 |
| 668 | 48.13 | radiation | 20 | 10 | < th | dose independent | rect. | 2 | 18 |
| 704 | 48.19 | humidity | 90 | 10 | < th | dose dependent | rect. | 5 | 10 |
| 719 | 48.21 | humidity | 90 | 90 | < th | dose independent | rect. | 23 | 16 |
| 826 | 48.35 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 9 |
| 886 | 48.43 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 928 | 48.49 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 9 |
| 999 | 48.56 | humidity | 80 | 10 | < th | dose independent | rect. | 4 | 12 |