Os01g0877400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9 elicitor response-like protein.
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Os01g0877400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9 elicitor response-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.28 | 0.352 | 2.96 | -0.585 | 0.0744 | 1.73 | -0.165 | -8.23 | -0.00741 | 5.88 | 999 | 280 | -- | -- |
| 56.99 | 0.354 | 2.88 | -0.161 | 0.0751 | 0.25 | -0.158 | -- | -0.00832 | 5.86 | 999 | 280 | -- | -- |
| 56.31 | 0.349 | 2.95 | -0.56 | 0.0757 | 1.7 | -- | -8.04 | -0.00802 | 6.76 | 998.9 | 229 | -- | -- |
| 56.73 | 0.351 | 2.88 | -0.17 | 0.0814 | 0.327 | -- | -- | -0.00754 | 5.84 | 998.4 | 493 | -- | -- |
| 56.51 | 0.35 | 2.95 | -0.557 | -- | 1.7 | -- | -7.99 | -0.00921 | -- | 998.9 | 579 | -- | -- |
| 58.31 | 0.358 | 2.88 | -0.127 | 0.0801 | -- | -0.136 | -- | -0.0207 | 6.01 | -- | -- | -- | -- |
| 58.34 | 0.358 | 2.88 | -0.128 | 0.0805 | -- | -- | -- | -0.02 | 6.67 | -- | -- | -- | -- |
| 57 | 0.353 | 2.88 | -0.159 | -- | 0.308 | -- | -- | -0.00567 | -- | 998.3 | 475 | -- | -- |
| 57.36 | 0.353 | 2.88 | -- | 0.0811 | 0.305 | -- | -- | 0.00907 | 6.64 | 998.3 | 475 | -- | -- |
| 58.68 | 0.358 | 2.88 | -0.126 | -- | -- | -- | -- | -0.0184 | -- | -- | -- | -- | -- |
| 58.77 | 0.359 | 2.88 | -- | 0.079 | -- | -- | -- | -0.00572 | 6.76 | -- | -- | -- | -- |
| 57.66 | 0.355 | 2.88 | -- | -- | 0.283 | -- | -- | 0.0107 | -- | 998.3 | 475 | -- | -- |
| 59.1 | 0.359 | 2.88 | -- | -- | -- | -- | -- | -0.00437 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.87 | temperature | 3e+01 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 31 | 40.00 | temperature | 3e+01 | 90 | > th | dose independent | rect. | 8 | 1 |
| 261 | 47.09 | atmosphere | 1e+03 | 90 | < th | dose independent | rect. | 8 | 3 |
| 262 | 47.14 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 9 | 1 |
| 315 | 49.68 | atmosphere | 1e+03 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 316 | 49.70 | atmosphere | 1e+03 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 329 | 49.97 | wind | 1e+00 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 353 | 50.40 | temperature | 3e+01 | 10 | > th | dose independent | rect. | 14 | 1 |
| 360 | 50.71 | temperature | 3e+01 | 90 | > th | dose independent | sin | 9 | NA |
| 366 | 51.01 | wind | 1e+00 | 90 | < th | dose independent | rect. | 13 | 1 |
| 368 | 51.06 | humidity | 7e+01 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 370 | 51.09 | temperature | 3e+01 | 90 | < th | dose independent | sin | 9 | NA |
| 373 | 51.22 | humidity | 7e+01 | 90 | < th | dose dependent | rect. | 6 | 3 |
| 418 | 52.39 | temperature | 3e+01 | 10 | > th | dose dependent | sin | 10 | NA |
| 434 | 52.55 | precipitation | 1e-01 | 10 | > th | dose dependent | rect. | 4 | 4 |
| 449 | 52.56 | precipitation | 1e-01 | 90 | > th | dose independent | rect. | 4 | 1 |
| 450 | 52.56 | precipitation | 1e-01 | 10 | > th | dose independent | rect. | 4 | 2 |
| 454 | 52.56 | precipitation | 1e-01 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 455 | 52.56 | precipitation | 1e-01 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 517 | 52.68 | wind | 3e+00 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 536 | 52.69 | wind | 3e+00 | 90 | > th | dose independent | rect. | 4 | 1 |
| 541 | 52.71 | wind | 3e+00 | 10 | > th | dose independent | rect. | 6 | 1 |
| 545 | 52.72 | wind | 3e+00 | 90 | > th | dose dependent | rect. | 5 | 1 |
| 713 | 53.30 | humidity | 7e+01 | 90 | < th | dose independent | rect. | 6 | 3 |
| 760 | 53.67 | radiation | 1e+00 | 10 | < th | dose independent | rect. | 6 | 1 |
| 874 | 54.03 | atmosphere | 1e+03 | 720 | < th | dose independent | rect. | 23 | 11 |
| 937 | 54.30 | wind | 1e+00 | 90 | < th | dose dependent | rect. | 8 | 1 |