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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0876200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chloride channel protein CLC-c (AtCLC-c).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0229) R2 : 1.41e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00388 (0.0483) R2dN8 : 1.82e-05 R2N8 : 1.41e-05
σ : 0.432
deviance : 85.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.81 0.363 3.1 -0.439 0.0959 10.3 0.0562 -66.1 0.0203 9.01 30.51 90 10.1 0.513
65.41 0.377 3 0.069 0.204 9.62 -0.435 -- 0.186 21.2 32.39 153 10.3 0.35
54.39 0.343 3.12 -0.39 0.0574 10.7 -- -66.1 -0.101 11.8 31.11 89 10.1 0.508
48.76 0.325 3.07 0.219 0.0114 6.63 -- -- 0.0454 7.3 32.37 137 10.1 0.187
52.36 0.337 3.12 -0.393 -- 10.9 -- -64.6 -0.103 -- 31.1 88 10.1 0.491
84.52 0.431 3.05 0.00129 0.132 -- 0.168 -- 0.00447 10.3 -- -- -- --
84.62 0.431 3.05 0.00741 0.133 -- -- -- 0.00452 9.89 -- -- -- --
46.98 0.319 3.05 -0.0101 -- 6.23 -- -- 0.0202 -- 32.44 138 10.2 0.332
46.43 0.317 3.05 -- 0.0979 6.2 -- -- 0.0206 8.83 32.26 149 10.3 0.182
85.69 0.433 3.05 0.00595 -- -- -- -- 0.00454 -- -- -- -- --
84.63 0.43 3.05 -- 0.133 -- -- -- 0.00369 9.88 -- -- -- --
46.98 0.319 3.05 -- -- 6.23 -- -- 0.0214 -- 32.44 137 10.2 0.339
85.69 0.432 3.05 -- -- -- -- -- 0.00388 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.07 temperature 30.0 90 > th dose dependent rect. 10 1
2 70.29 temperature 30.0 90 > th dose independent rect. 10 1
20 73.49 temperature 30.0 10 > th dose dependent rect. 11 2
111 76.03 temperature 30.0 90 > th dose dependent sin 8 NA
181 77.85 temperature 30.0 10 > th dose dependent sin 7 NA
188 78.89 radiation 40.0 90 > th dose dependent rect. 10 1
215 79.56 temperature 30.0 10 > th dose independent rect. 11 1
241 79.96 temperature 25.0 30 > th dose dependent rect. 20 11
242 79.98 radiation 30.0 270 > th dose independent rect. 7 1
372 80.65 humidity 90.0 30 < th dose dependent rect. 20 1
373 80.67 temperature 25.0 30 > th dose independent rect. 20 11
374 80.69 humidity 90.0 30 < th dose independent rect. 20 1
375 80.71 radiation 20.0 4320 < th dose dependent rect. 21 1
382 80.73 temperature 20.0 30 > th dose independent rect. 20 1
383 80.73 atmosphere 1005.0 30 > th dose independent rect. 20 1
384 80.73 wind 1.0 30 > th dose dependent rect. 20 1
388 80.74 temperature 10.0 30 > th dose dependent rect. 20 1
390 80.74 atmosphere 1005.0 30 > th dose dependent rect. 20 1
391 80.75 wind 3.0 30 > th dose independent rect. 20 1
392 80.75 radiation 40.0 90 > th dose independent rect. 10 1
394 80.75 atmosphere 995.0 30 > th dose dependent rect. 20 1
398 80.76 wind 7.0 30 < th dose independent rect. 20 1
400 80.76 temperature 10.0 30 > th dose independent rect. 20 1
402 80.76 temperature 30.0 30 < th dose independent rect. 20 1
403 80.76 humidity 50.0 30 > th dose independent rect. 20 1
406 80.76 atmosphere 995.0 30 > th dose independent rect. 20 1
408 80.76 atmosphere 1010.0 30 < th dose independent rect. 20 1
410 80.76 radiation 1.0 30 < th dose independent rect. 20 1
415 80.76 precipitation 0.1 30 < th dose independent rect. 20 1
416 80.76 temperature 10.0 30 > th dose independent rect. 21 23
417 80.76 radiation 1.0 30 < th dose dependent rect. 20 1
424 80.76 precipitation 0.1 30 < th dose dependent rect. 20 1
426 80.77 temperature 10.0 1440 > th dose independent rect. 21 1
429 80.77 temperature 30.0 1440 < th dose independent rect. 21 1
433 80.77 humidity 50.0 1440 > th dose independent rect. 21 1
439 80.77 atmosphere 995.0 1440 > th dose independent rect. 21 1
440 80.77 radiation 1.0 1440 < th dose independent rect. 21 1
460 80.77 temperature 10.0 1440 > th dose independent rect. 22 23
468 80.80 wind 9.0 30 < th dose dependent rect. 20 1
470 80.81 humidity 50.0 30 > th dose dependent rect. 20 1
474 80.82 atmosphere 1015.0 30 < th dose dependent rect. 20 1
533 81.00 temperature 30.0 30 < th dose dependent rect. 20 1
581 81.14 wind 9.0 30 < th dose independent rect. 21 23
584 81.15 temperature 30.0 270 > th dose independent sin 9 NA
596 81.20 radiation 40.0 90 > th dose dependent sin 9 NA
662 81.33 radiation 20.0 270 > th dose dependent rect. 7 2
678 81.34 temperature 25.0 30 > th dose dependent rect. 20 4
703 81.38 temperature 20.0 10 > th dose dependent rect. 6 6
777 81.47 wind 3.0 30 < th dose dependent rect. 6 1
800 81.50 radiation 10.0 10 > th dose independent rect. 6 1
827 81.50 atmosphere 1005.0 30 > th dose dependent rect. 6 1
828 81.50 radiation 10.0 10 > th dose dependent rect. 6 1
907 81.54 radiation 20.0 270 > th dose dependent sin 10 NA
917 81.57 temperature 30.0 270 < th dose independent sin 8 NA
936 81.60 humidity 80.0 30 > th dose dependent rect. 6 1
938 81.61 humidity 60.0 10 < th dose independent rect. 12 1
961 81.63 radiation 10.0 10 > th dose dependent rect. 11 1
997 81.68 wind 1.0 90 > th dose independent rect. 5 7