Os01g0875500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-galactosidase (EC 3.2.1.23).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0875500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Beta-galactosidase (EC 3.2.1.23).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 267.73 | 0.769 | 3.67 | -0.957 | 0.113 | -0.681 | 1.78 | 0.227 | -0.171 | 6.38 | 21.3 | 1810 | -- | -- |
| 267.83 | 0.762 | 3.67 | -1.03 | 0.124 | -0.688 | 1.84 | -- | -0.172 | 6.38 | 21.4 | 1746 | -- | -- |
| 275.23 | 0.773 | 3.67 | -0.962 | 0.126 | -0.693 | -- | 0.23 | -0.182 | 4.04 | 21.3 | 1811 | -- | -- |
| 273.36 | 0.77 | 3.69 | -0.991 | 0.191 | -0.687 | -- | -- | -0.213 | 2.49 | 21.2 | 982 | -- | -- |
| 276.31 | 0.774 | 3.68 | -0.962 | -- | -0.711 | -- | 0.0765 | -0.178 | -- | 21.3 | 1810 | -- | -- |
| 281.49 | 0.787 | 3.72 | -1.33 | 0.129 | -- | 1.84 | -- | -0.383 | 6.31 | -- | -- | -- | -- |
| 289.51 | 0.797 | 3.72 | -1.31 | 0.156 | -- | -- | -- | -0.39 | 4.5 | -- | -- | -- | -- |
| 275.69 | 0.773 | 3.68 | -1.04 | -- | -0.672 | -- | -- | -0.199 | -- | 21.4 | 985 | -- | -- |
| 292.22 | 0.796 | 3.64 | -- | 0.247 | -1.1 | -- | -- | 0.00465 | 4.3 | 20.8 | 3972 | -- | -- |
| 290.82 | 0.797 | 3.72 | -1.3 | -- | -- | -- | -- | -0.386 | -- | -- | -- | -- | -- |
| 334.71 | 0.856 | 3.69 | -- | 0.132 | -- | -- | -- | -0.244 | 4.74 | -- | -- | -- | -- |
| 288.47 | 0.791 | 3.64 | -- | -- | -1.33 | -- | -- | 0.00393 | -- | 19.1 | 6992 | -- | -- |
| 335.63 | 0.855 | 3.69 | -- | -- | -- | -- | -- | -0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 262.52 | temperature | 30 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 2 | 265.22 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 6 | 266.81 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 7 | 266.93 | atmosphere | 1000 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 9 | 267.03 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 12 | 267.23 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 7 |
| 16 | 267.38 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 12 |
| 18 | 267.53 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 9 |
| 20 | 267.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 22 | 267.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 14 | 10 |
| 39 | 267.75 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 4 |
| 56 | 267.87 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 4 |
| 63 | 267.89 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 131 | 268.14 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 169 | 268.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 198 | 268.42 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 9 |
| 255 | 268.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 267 | 268.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 269 | 268.65 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 282 | 268.69 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 1 |
| 291 | 268.70 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 14 |
| 317 | 268.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 350 | 268.83 | wind | 1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 374 | 268.89 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 5 |
| 381 | 268.90 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 19 | 7 |
| 403 | 268.95 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 405 | 268.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 412 | 268.96 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 18 |
| 414 | 268.97 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 437 | 269.00 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 482 | 269.07 | radiation | 1 | 90 | > th | dose independent | rect. | 12 | 7 |
| 492 | 269.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 501 | 269.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 552 | 269.16 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 554 | 269.16 | radiation | 40 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 578 | 269.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 588 | 269.21 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 625 | 269.25 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 640 | 269.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 650 | 269.28 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 669 | 269.30 | wind | 3 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 686 | 269.32 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 687 | 269.32 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 694 | 269.33 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 724 | 269.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 725 | 269.35 | wind | 1 | 90 | > th | dose independent | rect. | 20 | 16 |
| 772 | 269.40 | radiation | 40 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 800 | 269.43 | radiation | 40 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 835 | 269.46 | atmosphere | 1000 | 4320 | < th | dose dependent | sin | 9 | NA |
| 843 | 269.47 | wind | 3 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 889 | 269.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 903 | 269.54 | radiation | 40 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 920 | 269.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 966 | 269.62 | wind | 7 | 90 | < th | dose independent | rect. | 12 | 8 |
| 982 | 269.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |