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Os01g0874100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Deoxynucleoside kinase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0152) R2 : 0.778
β1 : 0.978 (0.0556) R2dD : 0.157 R2D : 0.0698
β2 : 1.36 (0.0395) R2dC : 0.577 R2C : 0.514
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.507 (0.0324) R2dN8 : 0.16 R2N8 : 0.0551
σ : 0.285
deviance : 37.15
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_____
C
peak time of C : 17.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.92 0.265 11.7 0.973 1.12 -0.456 0.668 0.717 0.484 18.6 12 230 -- --
33.76 0.271 11.7 0.984 1.08 -0.653 0.731 -- 0.5 19.5 8.319 226 -- --
33.02 0.268 11.7 0.966 1.13 -0.451 -- 0.703 0.488 18.6 11.93 221 -- --
35.21 0.276 11.7 0.967 1.12 -0.439 -- -- 0.492 18.5 10.49 235 -- --
41.48 0.3 11.7 0.955 -- -1.54 -- 1.15 0.457 -- 6.634 636 -- --
37.08 0.285 11.7 0.978 1.35 -- 0.172 -- 0.506 17.2 -- -- -- --
37.15 0.285 11.7 0.978 1.36 -- -- -- 0.507 17.2 -- -- -- --
38.16 0.288 11.7 0.869 -- -1.53 -- -- 0.44 -- 1.56 663 -- --
59.14 0.358 11.7 -- 1.05 -0.498 -- -- 0.358 18.3 23.32 292 -- --
133.18 0.539 11.7 0.931 -- -- -- -- 0.473 -- -- -- -- --
62.37 0.369 11.7 -- 1.34 -- -- -- 0.398 17.3 -- -- -- --
56.47 0.35 11.7 -- -- -1.58 -- -- 0.351 -- 0.007834 673 -- --
156.04 0.583 11.7 -- -- -- -- -- 0.369 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.40 temperature 10.0 270 > th dose dependent rect. 18 13
9 30.14 temperature 20.0 270 > th dose independent rect. 16 13
11 30.20 wind 7.0 270 < th dose independent rect. 6 11
20 30.40 humidity 60.0 270 > th dose independent rect. 17 13
22 30.42 temperature 10.0 720 > th dose dependent rect. 18 4
32 30.56 temperature 20.0 270 > th dose independent sin 15 NA
38 30.64 temperature 20.0 720 > th dose independent rect. 17 6
48 30.73 humidity 50.0 720 > th dose independent rect. 10 19
61 30.80 humidity 50.0 720 > th dose independent rect. 10 11
62 30.80 humidity 50.0 720 > th dose independent rect. 9 13
63 30.81 temperature 15.0 270 > th dose independent rect. 6 11
68 30.83 temperature 10.0 10 > th dose dependent sin 10 NA
85 30.88 temperature 30.0 270 < th dose dependent rect. 21 7
90 30.90 radiation 10.0 270 < th dose dependent rect. 16 18
92 30.93 radiation 10.0 720 < th dose independent rect. 17 6
98 30.95 temperature 30.0 270 < th dose independent rect. 17 13
104 30.98 temperature 20.0 270 > th dose independent rect. 15 8
108 30.98 radiation 30.0 4320 < th dose dependent rect. 24 5
110 30.99 humidity 60.0 720 > th dose independent rect. 17 5
122 31.03 temperature 30.0 270 < th dose dependent rect. 22 5
128 31.05 wind 7.0 270 < th dose independent rect. 12 14
153 31.10 humidity 50.0 270 > th dose independent rect. 4 17
160 31.11 temperature 10.0 270 > th dose dependent rect. 6 11
199 31.20 temperature 15.0 270 > th dose dependent sin 14 NA
215 31.24 temperature 15.0 270 > th dose independent rect. 21 7
221 31.25 radiation 10.0 720 < th dose independent rect. 16 13
241 31.28 temperature 15.0 10 > th dose dependent rect. 20 11
243 31.28 radiation 10.0 270 < th dose dependent rect. 24 23
256 31.32 temperature 20.0 90 > th dose independent rect. 4 9
266 31.34 wind 5.0 720 < th dose independent rect. 5 5
268 31.34 wind 9.0 270 < th dose dependent rect. 7 10
279 31.36 atmosphere 1010.0 270 < th dose independent rect. 17 13
284 31.37 temperature 20.0 10 > th dose independent rect. 5 9
290 31.38 radiation 10.0 1440 < th dose independent rect. 24 5
318 31.41 temperature 15.0 10 > th dose dependent rect. 17 13
322 31.42 wind 5.0 270 < th dose dependent rect. 4 7
331 31.44 wind 7.0 720 < th dose independent rect. 21 14
339 31.46 humidity 70.0 30 > th dose independent rect. 16 7
381 31.51 atmosphere 1015.0 270 < th dose independent rect. 4 17
384 31.52 radiation 1.0 270 > th dose independent sin 23 NA
386 31.52 temperature 20.0 10 > th dose independent rect. 5 7
408 31.54 temperature 15.0 270 > th dose independent rect. 4 17
453 31.61 wind 9.0 1440 < th dose independent rect. 24 5
455 31.61 temperature 10.0 1440 > th dose independent rect. 5 10
459 31.61 temperature 10.0 1440 > th dose independent rect. 15 14
462 31.61 precipitation 0.1 90 < th dose independent rect. 13 15
466 31.61 precipitation 0.1 90 < th dose dependent rect. 13 15
482 31.63 atmosphere 1015.0 270 < th dose independent rect. 3 19
493 31.64 temperature 30.0 270 < th dose dependent rect. 23 2
503 31.65 wind 7.0 270 < th dose independent rect. 21 20
518 31.67 temperature 15.0 720 > th dose independent rect. 5 6
524 31.67 temperature 30.0 10 < th dose dependent rect. 23 7
549 31.69 wind 9.0 270 < th dose independent rect. 4 17
550 31.69 wind 7.0 270 < th dose independent rect. 22 18
557 31.70 temperature 30.0 90 < th dose independent rect. 17 6
558 31.70 wind 7.0 270 < th dose independent rect. 21 7
567 31.71 temperature 30.0 270 < th dose independent rect. 21 7
569 31.71 humidity 50.0 270 > th dose independent rect. 21 7
572 31.71 atmosphere 995.0 270 > th dose independent rect. 21 7
574 31.71 radiation 1.0 270 < th dose independent rect. 21 7
591 31.71 radiation 1.0 270 < th dose dependent rect. 21 7
607 31.72 precipitation 0.1 270 < th dose independent rect. 6 11
615 31.72 precipitation 0.1 270 < th dose dependent rect. 6 11
620 31.73 temperature 30.0 270 < th dose independent rect. 14 8
645 31.76 humidity 70.0 10 > th dose independent sin 15 NA
655 31.77 humidity 50.0 720 > th dose independent sin 22 NA
664 31.77 radiation 10.0 270 < th dose independent rect. 16 17
665 31.77 radiation 1.0 270 < th dose independent rect. 24 23
666 31.77 radiation 10.0 720 < th dose dependent rect. 17 4
678 31.78 atmosphere 995.0 90 > th dose independent rect. 4 9
679 31.78 atmosphere 1015.0 90 < th dose independent rect. 4 9
680 31.78 precipitation 0.1 90 < th dose independent rect. 4 9
681 31.78 temperature 10.0 270 > th dose independent rect. 2 10
682 31.78 atmosphere 995.0 270 > th dose independent rect. 2 10
683 31.78 atmosphere 1015.0 270 < th dose independent rect. 2 10
686 31.78 atmosphere 1010.0 30 < th dose independent rect. 6 11
696 31.78 precipitation 0.1 90 < th dose dependent rect. 4 9
704 31.79 atmosphere 995.0 270 > th dose independent rect. 12 14
715 31.80 atmosphere 1010.0 720 < th dose independent rect. 18 3
717 31.80 atmosphere 1010.0 720 < th dose independent rect. 17 5
719 31.80 temperature 10.0 1440 > th dose independent rect. 5 8
723 31.80 atmosphere 995.0 1440 > th dose independent rect. 5 8
740 31.80 precipitation 0.1 270 < th dose independent rect. 11 16
745 31.80 wind 9.0 270 < th dose dependent rect. 13 14
746 31.80 precipitation 0.1 270 < th dose dependent rect. 11 16
765 31.82 wind 9.0 90 < th dose independent rect. 4 9
766 31.82 precipitation 0.1 270 < th dose independent rect. 2 10
772 31.82 precipitation 0.1 270 < th dose dependent rect. 2 10
806 31.84 atmosphere 1015.0 270 < th dose independent rect. 6 11
807 31.84 radiation 1.0 270 > th dose independent rect. 6 11
829 31.85 radiation 40.0 4320 < th dose independent rect. 16 13
856 31.87 radiation 40.0 270 < th dose independent rect. 3 8
867 31.87 humidity 50.0 270 > th dose dependent rect. 3 9
890 31.89 wind 9.0 270 < th dose independent rect. 2 10
919 31.90 atmosphere 1015.0 270 < th dose dependent rect. 17 12
927 31.91 wind 9.0 270 < th dose independent rect. 17 13
930 31.91 atmosphere 1015.0 720 < th dose independent rect. 9 14
947 31.92 atmosphere 995.0 270 > th dose independent rect. 6 11
973 31.93 humidity 50.0 270 > th dose independent rect. 2 10
976 31.93 humidity 70.0 10 > th dose independent rect. 17 14
984 31.93 radiation 40.0 10 < th dose independent rect. 12 17