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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0873000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.7 (0.0659) R2 : 0.832
β1 : -4.05 (0.294) R2dD : 0.149 R2D : 0.228
β2 : 3.7 (0.147) R2dC : 0.238 R2C : 0.109
β3 : -1.78 (0.185) R2dE : 0.0517 R2E : -0.0798
β4 : -3.05 (0.682) R2dD*C : 0.0077 R2D*C : -0.117
β5 : 3.28 (0.688) R2dD*E : 0.0195 R2D*E : -0.0265
γ1 : 3.21 (0.143) R2dN8 : 0.355 R2N8 : 0.25
σ : 1.06
deviance : 505.55
__
_____
C
peak time of C : 5.38
E
wheather : temperature
threshold : 19.9
memory length : 2914
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23.3
open length of G : 1.58

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
505.55 1.06 5.7 -4.05 3.7 -1.78 -3.05 3.28 3.21 5.38 19.9 2914 23.3 1.58
551.94 1.09 5.72 -4.05 3.74 -1.89 -2.34 -- 3.31 5.4 19.9 2915 22.2 3.77
526.24 1.07 5.72 -3.99 3.71 -1.93 -- 3.04 3.23 5.48 19.9 2927 23.1 1.52
550.6 1.09 5.77 -3.81 3.77 -2.46 -- -- 3.26 5.51 19.35 14823 22.4 1.53
1221.25 1.63 5.73 -4.21 -- -1.34 -- 3.08 3.27 -- 19.9 2899 23.3 1.37
655.86 1.2 5.99 -6.07 3.53 -- -1.98 -- 2.33 5.56 -- -- -- --
664.66 1.21 5.98 -6.08 3.52 -- -- -- 2.34 5.69 -- -- -- --
1172 1.6 6.06 -6.06 -- 1.73 -- -- 2.32 -- 16.67 47520 2.63 2.58
594.44 1.14 5.58 -- 3.58 -4.88 -- -- 4.2 5.57 18.32 47520 19.4 6.6
1308.87 1.69 6.04 -5.96 -- -- -- -- 2.42 -- -- -- -- --
1637.84 1.89 5.83 -- 3.43 -- -- -- 3.02 5.76 -- -- -- --
1252.99 1.65 5.62 -- -- -4.84 -- -- 4.29 -- 18.4 47520 19 6.14
2247.38 2.21 5.89 -- -- -- -- -- 3.09 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 525.01 radiation 10 1440 < th dose dependent rect. 18 2
3 526.30 temperature 20 4320 > th dose independent rect. 23 1
5 527.01 temperature 20 4320 < th dose independent rect. 23 1
7 528.13 radiation 10 1440 < th dose dependent rect. 18 4
10 529.32 temperature 20 1440 < th dose independent rect. 3 3
12 529.48 temperature 20 1440 > th dose independent rect. 4 2
17 530.54 temperature 20 4320 > th dose independent rect. 22 5
32 531.39 temperature 20 4320 < th dose independent rect. 22 5
62 533.21 radiation 1 1440 > th dose dependent rect. 18 1
97 534.65 temperature 20 4320 > th dose independent rect. 1 2
103 534.92 temperature 20 4320 < th dose independent rect. 1 2
122 535.31 temperature 20 1440 > th dose dependent rect. 7 2
169 536.70 radiation 20 4320 < th dose independent rect. 17 11
197 538.34 temperature 20 4320 < th dose dependent rect. 18 1
200 538.43 temperature 20 4320 < th dose independent rect. 17 2
203 538.60 temperature 20 4320 > th dose independent sin 12 NA
232 539.29 humidity 60 43200 < th dose dependent rect. 5 3
267 540.67 temperature 20 4320 < th dose independent sin 12 NA
309 541.91 temperature 20 4320 < th dose independent rect. 13 6
323 542.31 wind 1 1440 > th dose independent rect. 23 2
336 542.66 humidity 70 43200 > th dose independent rect. 23 8
391 544.32 humidity 70 43200 < th dose dependent rect. 22 10
418 544.93 temperature 25 4320 < th dose dependent rect. 8 3
426 545.01 temperature 20 4320 > th dose independent rect. 7 17
450 545.44 humidity 70 43200 < th dose independent rect. 23 8
452 545.53 temperature 20 4320 > th dose independent rect. 11 13
479 545.99 temperature 20 14400 < th dose dependent rect. 22 1
502 546.47 temperature 20 4320 < th dose independent rect. 11 13
514 546.58 temperature 20 4320 < th dose independent rect. 7 17
538 546.85 temperature 25 1440 < th dose independent rect. 7 4
573 547.45 temperature 20 14400 < th dose dependent rect. 21 3
682 548.77 humidity 90 43200 > th dose dependent rect. 13 2
695 548.93 temperature 20 4320 > th dose independent rect. 17 2
703 549.02 humidity 60 43200 < th dose independent rect. 21 11
708 549.07 temperature 20 4320 < th dose independent sin 19 NA
760 549.75 temperature 25 1440 > th dose independent rect. 7 4
790 550.14 wind 1 43200 < th dose independent rect. 22 4
931 551.56 temperature 20 4320 > th dose independent no NA NA
960 551.77 wind 1 43200 < th dose dependent rect. 23 3