Os01g0872800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-phosphoinositide-dependent protein kinase-1 (Fragment).
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Os01g0872800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 3-phosphoinositide-dependent protein kinase-1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.57 | 0.372 | 11.2 | -0.43 | 1.51 | -1.04 | -0.302 | 1.25 | 0.285 | 0.472 | -5.317 | 49 | -- | -- |
| 64.48 | 0.374 | 11.2 | -0.334 | 1.46 | -1.1 | -0.738 | -- | 0.311 | 0.446 | -0.0003476 | 48 | -- | -- |
| 62.73 | 0.369 | 11.2 | -0.428 | 1.52 | -1.03 | -- | 1.58 | 0.285 | 0.465 | -6.214 | 49 | -- | -- |
| 68.38 | 0.385 | 11.2 | -0.38 | 1.48 | -1.11 | -- | -- | 0.293 | 0.461 | -8.748 | 49 | -- | -- |
| 122.8 | 0.516 | 11.2 | -0.317 | -- | -2.38 | -- | 0.882 | 0.444 | -- | -5.022e-05 | 69 | -- | -- |
| 78.07 | 0.414 | 11.3 | -0.419 | 2.1 | -- | -1.02 | -- | 0.256 | 0.455 | -- | -- | -- | -- |
| 82.54 | 0.425 | 11.2 | -0.38 | 2.1 | -- | -- | -- | 0.261 | 0.441 | -- | -- | -- | -- |
| 118.76 | 0.508 | 11.2 | -0.364 | -- | -2.76 | -- | -- | 0.349 | -- | -4.094 | 48 | -- | -- |
| 72.21 | 0.396 | 11.2 | -- | 1.47 | -1.1 | -- | -- | 0.335 | 0.449 | -10.41 | 48 | -- | -- |
| 359.21 | 0.886 | 11.2 | -0.308 | -- | -- | -- | -- | 0.296 | -- | -- | -- | -- | -- |
| 86.34 | 0.435 | 11.2 | -- | 2.09 | -- | -- | -- | 0.303 | 0.432 | -- | -- | -- | -- |
| 122.26 | 0.515 | 11.2 | -- | -- | -2.75 | -- | -- | 0.389 | -- | -0.3682 | 48 | -- | -- |
| 361.71 | 0.888 | 11.2 | -- | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.51 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 9 | 57.38 | radiation | 40.0 | 30 | < th | dose independent | rect. | 3 | 17 |
| 10 | 57.42 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 17 |
| 11 | 57.55 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 15 | 57.92 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 18 | 58.07 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 19 | 58.07 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 25 | 58.21 | humidity | 50.0 | 10 | > th | dose dependent | sin | 2 | NA |
| 28 | 58.28 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 6 | 8 |
| 31 | 58.33 | humidity | 90.0 | 10 | < th | dose dependent | sin | 2 | NA |
| 32 | 58.34 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 42 | 58.50 | humidity | 60.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 46 | 58.57 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 53 | 58.60 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 16 |
| 148 | 59.82 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 195 | 60.18 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 3 | 12 |
| 273 | 60.75 | radiation | 10.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 348 | 61.12 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 419 | 61.39 | humidity | 80.0 | 30 | < th | dose independent | rect. | 9 | 5 |
| 422 | 61.40 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 452 | 61.52 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 484 | 61.69 | radiation | 10.0 | 10 | < th | dose dependent | sin | 0 | NA |
| 538 | 62.01 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 17 |
| 572 | 62.14 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 7 |
| 577 | 62.17 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 7 |
| 579 | 62.17 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 7 |
| 581 | 62.18 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 582 | 62.18 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 7 |
| 583 | 62.18 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 587 | 62.18 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 7 |
| 592 | 62.18 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 594 | 62.18 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 17 |
| 596 | 62.18 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 7 |
| 611 | 62.20 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 631 | 62.24 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 675 | 62.28 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 17 |
| 677 | 62.28 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 17 |
| 688 | 62.32 | humidity | 70.0 | 10 | > th | dose independent | rect. | 3 | 11 |
| 689 | 62.32 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 15 |
| 702 | 62.35 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 17 |
| 746 | 62.49 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 756 | 62.50 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 773 | 62.54 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 813 | 62.68 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 834 | 62.73 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 861 | 62.78 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 864 | 62.78 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 868 | 62.78 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 874 | 62.78 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 875 | 62.78 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 895 | 62.78 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 17 |
| 905 | 62.79 | humidity | 80.0 | 10 | < th | dose independent | rect. | 7 | 9 |
| 913 | 62.80 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 11 | 3 |
| 920 | 62.82 | humidity | 80.0 | 90 | < th | dose independent | rect. | 7 | 7 |
| 933 | 62.83 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 940 | 62.86 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 7 |
| 957 | 62.91 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 972 | 62.94 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 973 | 62.94 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 12 |