Os01g0872600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os01g0872600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.24 | 0.691 | 7.92 | -2.53 | 1.47 | 1.75 | 0.147 | -1.7 | -0.35 | 21.3 | 24.68 | 1258 | -- | -- |
| 217.72 | 0.687 | 7.89 | -2.09 | 1.5 | 1.61 | 0.0195 | -- | -0.258 | 21.4 | 24.68 | 1267 | -- | -- |
| 216.32 | 0.685 | 7.92 | -2.52 | 1.47 | 1.75 | -- | -1.64 | -0.347 | 21.3 | 24.67 | 1257 | -- | -- |
| 217.35 | 0.687 | 7.88 | -2.09 | 1.48 | 1.63 | -- | -- | -0.26 | 21.2 | 24.38 | 1253 | -- | -- |
| 289.8 | 0.793 | 7.91 | -2.56 | -- | 2.63 | -- | -1.85 | -0.504 | -- | 23.85 | 894 | -- | -- |
| 304.95 | 0.819 | 7.82 | -1.58 | 1.62 | -- | 0.368 | -- | -0.0303 | 21.9 | -- | -- | -- | -- |
| 305.46 | 0.818 | 7.82 | -1.59 | 1.62 | -- | -- | -- | -0.0307 | 21.9 | -- | -- | -- | -- |
| 292.16 | 0.796 | 7.87 | -2.26 | -- | 2.45 | -- | -- | -0.379 | -- | 23.63 | 889 | -- | -- |
| 319.8 | 0.833 | 7.76 | -- | 1.5 | 1.04 | -- | -- | 0.271 | 21.5 | 28.4 | 1230 | -- | -- |
| 462.73 | 1.01 | 7.78 | -1.57 | -- | -- | -- | -- | -0.0308 | -- | -- | -- | -- | -- |
| 372.07 | 0.902 | 7.78 | -- | 1.62 | -- | -- | -- | 0.146 | 21.8 | -- | -- | -- | -- |
| 412.71 | 0.946 | 7.78 | -- | -- | 1.95 | -- | -- | -0.0305 | -- | 24.07 | 861 | -- | -- |
| 527.9 | 1.07 | 7.74 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 2 | 216.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 13 | 216.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 44 | 217.56 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 144 | 220.03 | temperature | 30 | 1440 | < th | dose independent | sin | 16 | NA |
| 161 | 220.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 166 | 220.28 | temperature | 30 | 1440 | > th | dose independent | sin | 15 | NA |
| 179 | 220.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 21 |
| 191 | 220.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 202 | 220.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 206 | 220.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 210 | 220.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 217 | 220.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 218 | 220.49 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 230 | 220.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 232 | 220.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 241 | 220.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 249 | 220.57 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 271 | 220.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 273 | 220.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 285 | 220.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 298 | 220.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 328 | 220.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 348 | 220.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 352 | 220.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 370 | 220.78 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 378 | 220.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 390 | 220.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 409 | 220.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 411 | 220.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 418 | 220.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 436 | 220.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 441 | 220.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 442 | 220.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 443 | 220.98 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 455 | 221.00 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 477 | 221.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 492 | 221.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 497 | 221.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 510 | 221.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 637 | 221.55 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 730 | 221.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |