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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0872500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.17 (0.03) R2 : 0.851
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.56 (0.0923) R2dC : 1.14 R2C : 0.686
β3 : 1.42 (0.0806) R2dE : 0.145 R2E : -0.296
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.388 (0.0632) R2dN8 : 0.0159 R2N8 : 0.00761
σ : 0.563
deviance : 146.35
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_____
C
peak time of C : 16.4
E
wheather : temperature
threshold : 20.04
memory length : 99
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.7
open length of G : 6.53

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
141.97 0.56 9.18 -0.444 4.58 1.45 0.146 -0.27 0.339 16.4 19.91 94 21.9 6.4
141.85 0.555 9.18 -0.405 4.59 1.44 0.239 -- 0.34 16.4 19.9 93 21.8 6.57
141.61 0.554 9.18 -0.441 4.58 1.45 -- -0.291 0.334 16.4 19.9 96 21.7 6.55
141.73 0.554 9.18 -0.424 4.6 1.46 -- -- 0.346 16.4 20 100 21.7 6.53
288.22 0.791 9.31 0.581 -- -2.89 -- 0.426 0.303 -- 17.1 319 20.4 12.2
217 0.691 9.18 -0.258 3.78 -- 0.21 -- 0.391 17.1 -- -- -- --
217.12 0.69 9.18 -0.258 3.78 -- -- -- 0.392 17.1 -- -- -- --
223.63 0.696 9.09 -0.0174 -- -3.35 -- -- 0.464 -- 16.9 456 19.8 11.3
146.35 0.563 9.17 -- 4.56 1.42 -- -- 0.388 16.4 20.04 99 21.7 6.53
968.08 1.45 9.13 -0.393 -- -- -- -- 0.296 -- -- -- -- --
218.87 0.692 9.17 -- 3.79 -- -- -- 0.421 17.1 -- -- -- --
209.9 0.675 9.05 -- -- -3.81 -- -- 0.403 -- 15.07 556 19.3 10.7
972.16 1.46 9.12 -- -- -- -- -- 0.339 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.89 temperature 20.0 90 > th dose independent rect. 22 6
10 151.25 temperature 15.0 270 > th dose dependent rect. 21 5
19 155.63 temperature 15.0 270 > th dose dependent rect. 20 7
67 164.76 temperature 20.0 270 > th dose independent rect. 9 17
79 166.27 temperature 20.0 90 > th dose independent rect. 11 17
114 169.90 humidity 60.0 270 > th dose dependent rect. 21 5
116 169.95 radiation 1.0 30 < th dose independent sin 9 NA
117 169.97 radiation 1.0 30 < th dose independent rect. 22 16
121 170.33 precipitation 0.1 270 < th dose independent rect. 2 19
122 170.33 precipitation 0.1 270 < th dose dependent rect. 2 19
123 170.38 radiation 1.0 30 < th dose independent rect. 22 14
125 170.40 radiation 1.0 30 < th dose independent rect. 22 10
129 170.43 atmosphere 1015.0 270 < th dose independent rect. 21 5
132 170.82 temperature 15.0 270 > th dose independent rect. 2 19
140 171.36 humidity 80.0 270 > th dose independent rect. 21 5
144 171.75 radiation 1.0 30 > th dose independent sin 9 NA
155 172.43 radiation 1.0 30 < th dose dependent rect. 22 16
157 172.48 atmosphere 1015.0 30 < th dose independent rect. 22 7
164 172.70 radiation 1.0 30 < th dose independent rect. 22 8
167 172.84 radiation 1.0 30 < th dose dependent rect. 22 14
169 172.86 radiation 1.0 30 < th dose dependent rect. 22 10
185 173.33 radiation 1.0 30 < th dose dependent sin 9 NA
191 173.46 wind 9.0 270 < th dose dependent rect. 2 7
193 173.52 precipitation 0.1 270 < th dose independent rect. 16 15
196 173.52 precipitation 0.1 270 < th dose dependent rect. 16 15
198 173.58 radiation 20.0 270 < th dose independent rect. 16 15
201 173.67 precipitation 0.1 270 < th dose independent rect. 21 5
202 173.67 precipitation 0.1 270 < th dose dependent rect. 21 5
203 173.69 wind 9.0 270 < th dose independent rect. 2 19
213 173.84 wind 5.0 270 < th dose independent rect. 2 7
214 173.86 temperature 20.0 90 > th dose independent rect. 7 21
215 173.89 humidity 80.0 30 > th dose independent rect. 22 7
216 173.91 temperature 10.0 270 > th dose independent rect. 21 5
217 173.91 temperature 30.0 270 < th dose independent rect. 21 5
218 173.91 humidity 50.0 270 > th dose independent rect. 21 5
221 173.91 atmosphere 995.0 270 > th dose independent rect. 21 5
222 173.91 radiation 1.0 270 < th dose independent rect. 21 5
228 173.91 radiation 1.0 270 < th dose dependent rect. 21 5
235 174.03 wind 9.0 270 < th dose independent rect. 21 5
244 174.27 radiation 1.0 30 < th dose dependent rect. 22 8
249 174.42 humidity 80.0 270 > th dose independent rect. 23 2
275 174.91 precipitation 0.1 270 < th dose independent rect. 2 7
276 174.91 precipitation 0.1 270 < th dose dependent rect. 2 7
279 174.97 radiation 1.0 90 > th dose independent rect. 4 2
313 175.28 wind 9.0 270 < th dose independent rect. 16 15
317 175.33 wind 9.0 270 < th dose dependent rect. 21 5
324 175.40 radiation 40.0 270 < th dose dependent rect. 16 15
337 175.57 temperature 10.0 270 > th dose independent rect. 7 9
338 175.57 atmosphere 1015.0 270 < th dose independent rect. 7 9
339 175.57 temperature 10.0 270 > th dose independent rect. 16 15
366 175.95 atmosphere 1015.0 270 < th dose independent rect. 9 17
374 176.05 wind 9.0 30 < th dose independent rect. 5 17
383 176.18 precipitation 0.1 270 < th dose independent rect. 7 9
384 176.18 precipitation 0.1 270 < th dose dependent rect. 7 9
393 176.34 wind 9.0 270 < th dose dependent rect. 2 19
401 176.49 atmosphere 995.0 270 > th dose independent rect. 7 9
415 176.62 temperature 10.0 30 > th dose independent rect. 22 7
416 176.62 temperature 30.0 30 < th dose independent rect. 22 7
417 176.62 humidity 50.0 30 > th dose independent rect. 22 7
420 176.62 atmosphere 995.0 30 > th dose independent rect. 22 7
428 176.62 atmosphere 1015.0 30 < th dose independent rect. 5 17
437 176.68 wind 9.0 30 < th dose independent rect. 22 7
475 176.90 atmosphere 1015.0 270 < th dose independent rect. 2 19
487 177.04 atmosphere 1015.0 270 < th dose independent rect. 22 15
501 177.18 temperature 10.0 270 > th dose dependent rect. 2 7
502 177.19 wind 3.0 270 < th dose independent rect. 3 4
505 177.24 wind 9.0 270 < th dose independent rect. 7 9
524 177.55 atmosphere 995.0 270 > th dose independent rect. 16 15
529 177.57 wind 9.0 270 < th dose dependent rect. 23 2
536 177.63 precipitation 0.1 30 < th dose independent rect. 5 17
537 177.63 precipitation 0.1 30 < th dose dependent rect. 5 17
547 177.72 wind 9.0 90 < th dose dependent rect. 4 17
570 177.79 wind 1.0 270 > th dose independent rect. 7 9
593 177.94 humidity 50.0 270 > th dose independent rect. 7 9
608 178.00 wind 7.0 90 < th dose dependent rect. 4 7
610 178.01 temperature 10.0 270 > th dose independent rect. 2 7
612 178.01 humidity 50.0 270 > th dose independent rect. 2 7
613 178.01 atmosphere 995.0 270 > th dose independent rect. 2 7
614 178.01 atmosphere 1015.0 270 < th dose independent rect. 2 7
615 178.01 temperature 10.0 270 > th dose independent rect. 9 17
623 178.06 humidity 50.0 270 > th dose independent rect. 16 15
645 178.22 atmosphere 995.0 270 > th dose independent rect. 2 19
709 178.54 wind 5.0 270 < th dose dependent rect. 3 4
725 178.56 atmosphere 1015.0 270 < th dose independent rect. 3 17
733 178.61 temperature 20.0 90 < th dose independent rect. 15 15
734 178.63 temperature 20.0 90 < th dose independent rect. 17 13
741 178.67 temperature 30.0 270 < th dose independent rect. 2 7
746 178.69 radiation 40.0 270 < th dose independent rect. 2 7
792 178.97 wind 9.0 270 < th dose independent rect. 9 17
868 179.29 precipitation 0.1 270 < th dose independent rect. 3 3
870 179.29 precipitation 0.1 270 < th dose dependent rect. 3 3
933 179.70 atmosphere 995.0 30 > th dose independent rect. 5 17
937 179.76 precipitation 0.1 270 < th dose independent rect. 9 17
939 179.76 precipitation 0.1 270 < th dose dependent rect. 9 17
941 179.78 precipitation 0.1 30 < th dose independent rect. 22 7
942 179.78 precipitation 0.1 30 < th dose dependent rect. 22 7
957 179.94 wind 9.0 30 < th dose dependent rect. 22 7
976 180.15 atmosphere 1015.0 90 < th dose dependent rect. 5 2
992 180.33 temperature 30.0 90 < th dose dependent rect. 17 14