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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0871900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.59 (0.0352) R2 : 0.908
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.24 (0.119) R2dC : 0.128 R2C : 0.425
β3 : -3.92 (0.113) R2dE : 0.432 R2E : 0.744
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.973 (0.074) R2dN8 : 0.0438 R2N8 : 0.0384
σ : 0.66
deviance : 200.65
__
_____
C
peak time of C : 20.3
E
wheather : wind
threshold : 52.92
memory length : 205
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.2
open length of G : 17.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
183.33 0.636 4.58 0.483 2.22 -3.96 0.583 -1.71 1 20.2 17.48 214 19.1 17.9
188.42 0.639 4.59 0.45 2.27 -3.89 1.61 -- 0.993 20.2 26.66 206 19.2 17.8
183.85 0.632 4.58 0.489 2.22 -3.95 -- -2.04 1.01 20.3 17.17 210 19.2 17.9
196.32 0.653 4.59 0.402 2.23 -3.93 -- -- 0.993 20.3 45.1 204 19.2 17.8
241.48 0.724 4.52 0.455 -- -5.24 -- -2.17 0.953 -- 57.36 278 20.2 16.2
512.45 1.06 4.62 0.593 5.47 -- 2.04 -- 1.18 18.9 -- -- -- --
523.2 1.07 4.62 0.556 5.47 -- -- -- 1.18 18.9 -- -- -- --
254.91 0.744 4.53 0.452 -- -5.34 -- -- 0.948 -- 100.5 297 19.9 16.3
200.65 0.66 4.59 -- 2.24 -3.92 -- -- 0.973 20.3 52.92 205 19.2 17.8
2095.8 2.14 4.5 0.442 -- -- -- -- 1.08 -- -- -- -- --
531.35 1.08 4.64 -- 5.47 -- -- -- 1.12 18.9 -- -- -- --
256.03 0.745 4.55 -- -- -5.45 -- -- 0.889 -- 78.11 327 19.8 16.1
2100.94 2.14 4.52 -- -- -- -- -- 1.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.46 wind 9.0 270 < th dose independent rect. 19 18
4 201.06 temperature 10.0 270 > th dose independent rect. 12 7
6 201.06 atmosphere 1015.0 270 < th dose independent rect. 12 7
7 201.06 temperature 10.0 270 > th dose independent rect. 19 17
8 201.06 atmosphere 995.0 270 > th dose independent rect. 19 17
16 201.92 wind 9.0 270 < th dose independent rect. 13 6
27 203.69 wind 9.0 270 < th dose independent rect. 23 9
28 203.71 temperature 10.0 270 > th dose independent rect. 23 9
29 203.71 temperature 30.0 270 < th dose independent rect. 23 9
30 203.71 humidity 50.0 270 > th dose independent rect. 23 9
32 203.71 atmosphere 995.0 270 > th dose independent rect. 23 9
33 203.71 temperature 10.0 270 > th dose independent rect. 8 15
35 204.07 radiation 40.0 270 < th dose independent rect. 23 9
36 204.18 precipitation 0.1 270 < th dose independent rect. 13 6
37 204.18 precipitation 0.1 270 < th dose dependent rect. 13 6
42 205.49 wind 9.0 270 < th dose independent rect. 8 15
44 206.08 precipitation 0.1 270 < th dose independent rect. 23 9
45 206.08 precipitation 0.1 270 < th dose dependent rect. 23 9
46 206.20 precipitation 0.1 270 < th dose independent rect. 19 17
47 206.20 precipitation 0.1 270 < th dose dependent rect. 19 17
48 206.35 precipitation 0.1 270 < th dose independent rect. 18 19
49 206.35 precipitation 0.1 270 < th dose dependent rect. 18 19
53 206.84 wind 1.0 270 > th dose independent rect. 12 7
55 207.69 wind 1.0 270 > th dose independent rect. 13 5
56 208.63 humidity 50.0 270 > th dose independent rect. 19 17
62 210.24 radiation 1.0 270 > th dose independent rect. 7 6
66 212.02 atmosphere 1015.0 270 < th dose independent rect. 23 9
67 212.46 temperature 15.0 270 > th dose independent rect. 7 6
68 214.43 precipitation 0.1 270 < th dose independent rect. 8 15
69 214.43 precipitation 0.1 270 < th dose dependent rect. 8 15
70 214.80 atmosphere 995.0 270 > th dose independent rect. 13 5
73 216.65 wind 9.0 270 < th dose independent rect. 7 6
75 217.60 precipitation 0.1 270 < th dose independent rect. 7 6
76 217.60 precipitation 0.1 270 < th dose dependent rect. 7 6
79 218.29 atmosphere 995.0 270 > th dose independent rect. 7 6
80 218.29 atmosphere 1015.0 270 < th dose independent rect. 7 6
81 218.29 temperature 10.0 270 > th dose independent rect. 13 18
93 219.33 wind 9.0 270 < th dose independent rect. 13 18
95 220.40 radiation 40.0 90 < th dose independent rect. 13 7
96 220.41 wind 9.0 10 < th dose independent rect. 21 17
102 221.59 radiation 40.0 10 < th dose independent rect. 14 7
105 222.09 precipitation 0.1 10 < th dose independent rect. 14 7
106 222.09 precipitation 0.1 10 < th dose dependent rect. 14 7
112 222.68 temperature 10.0 10 > th dose independent rect. 14 7
114 222.68 atmosphere 1010.0 10 < th dose independent rect. 14 7
116 222.68 temperature 10.0 10 > th dose independent rect. 21 17
117 222.68 atmosphere 995.0 10 > th dose independent rect. 21 17
135 223.16 wind 1.0 270 > th dose independent rect. 6 7
138 223.33 temperature 10.0 270 > th dose dependent rect. 7 6
147 224.09 wind 1.0 10 > th dose independent rect. 14 7
149 224.16 precipitation 0.1 270 < th dose independent rect. 13 18
150 224.16 precipitation 0.1 270 < th dose dependent rect. 13 18
158 224.73 humidity 50.0 270 > th dose independent rect. 7 6
164 225.33 radiation 40.0 270 < th dose independent rect. 14 3
186 225.94 wind 9.0 10 < th dose independent rect. 14 7
197 226.88 precipitation 0.1 270 < th dose independent rect. 14 3
198 226.88 precipitation 0.1 270 < th dose dependent rect. 14 3
199 226.96 radiation 40.0 270 < th dose dependent rect. 23 9
205 227.74 wind 1.0 270 > th dose independent rect. 14 3
282 232.56 temperature 10.0 1440 > th dose independent rect. 15 7
285 232.56 temperature 10.0 1440 > th dose independent rect. 22 17
289 233.09 atmosphere 995.0 10 > th dose independent rect. 14 7
292 233.26 atmosphere 995.0 270 > th dose independent rect. 13 18
300 234.04 atmosphere 995.0 270 > th dose dependent rect. 13 5
304 234.42 temperature 10.0 270 > th dose dependent rect. 8 4
318 235.46 radiation 1.0 270 > th dose independent rect. 13 17
349 236.96 wind 1.0 270 > th dose independent rect. 18 19
399 240.06 humidity 60.0 270 > th dose independent rect. 18 7
400 240.09 wind 9.0 270 < th dose dependent rect. 23 9
406 240.46 atmosphere 1015.0 270 < th dose independent rect. 19 18
407 240.49 radiation 20.0 270 < th dose dependent rect. 17 9
410 240.61 temperature 10.0 270 > th dose independent rect. 18 8
412 240.61 radiation 20.0 270 < th dose independent rect. 18 8
415 240.61 temperature 10.0 270 > th dose independent rect. 2 16
416 240.61 atmosphere 1015.0 270 < th dose independent rect. 2 16
418 240.73 radiation 40.0 270 < th dose dependent rect. 18 8
420 240.85 wind 9.0 270 < th dose independent rect. 18 8
437 241.04 radiation 1.0 270 > th dose independent rect. 9 2
450 241.20 humidity 50.0 270 > th dose dependent rect. 23 9
469 242.07 atmosphere 995.0 270 > th dose independent rect. 18 7
471 242.23 temperature 15.0 270 > th dose independent rect. 9 2
480 242.54 temperature 30.0 270 < th dose independent rect. 18 7
499 243.61 radiation 1.0 270 > th dose independent rect. 13 6
520 244.42 wind 1.0 270 > th dose independent rect. 8 15
521 244.46 wind 9.0 270 < th dose independent rect. 1 17
522 244.47 atmosphere 1015.0 270 < th dose independent rect. 8 15
524 244.56 temperature 10.0 270 > th dose dependent rect. 9 2
549 245.31 wind 7.0 270 < th dose independent rect. 9 2
569 246.18 precipitation 0.1 270 < th dose independent rect. 9 2
570 246.18 precipitation 0.1 270 < th dose dependent rect. 9 2
573 246.34 precipitation 0.1 270 < th dose independent rect. 2 16
574 246.34 precipitation 0.1 270 < th dose dependent rect. 2 16
596 246.69 precipitation 0.1 270 < th dose independent rect. 18 7
597 246.69 precipitation 0.1 270 < th dose dependent rect. 18 7
610 247.04 atmosphere 995.0 270 > th dose independent rect. 9 2
611 247.04 atmosphere 1015.0 270 < th dose independent rect. 9 2
612 247.04 temperature 10.0 270 > th dose independent rect. 11 22
660 248.98 humidity 90.0 270 < th dose independent rect. 13 5
674 249.94 humidity 50.0 270 > th dose independent rect. 9 2
684 250.48 radiation 1.0 270 > th dose independent rect. 14 3
686 250.50 humidity 90.0 90 < th dose independent rect. 9 5
717 251.63 wind 1.0 270 > th dose independent rect. 9 2
758 252.60 atmosphere 995.0 270 > th dose independent rect. 8 15
797 253.43 radiation 40.0 270 < th dose independent rect. 13 18
807 253.95 atmosphere 995.0 270 > th dose independent rect. 1 17
812 254.15 humidity 50.0 10 > th dose independent rect. 14 7
822 254.64 wind 9.0 270 < th dose independent rect. 11 22
828 254.95 radiation 40.0 10 < th dose dependent rect. 14 6
829 255.04 temperature 10.0 10 > th dose dependent rect. 8 6
831 255.07 atmosphere 1015.0 270 < th dose independent rect. 13 18
847 255.99 atmosphere 995.0 10 > th dose dependent rect. 14 6
865 257.10 precipitation 0.1 270 < th dose independent rect. 15 1
867 257.10 precipitation 0.1 270 < th dose dependent rect. 15 1
869 257.15 temperature 10.0 270 > th dose independent rect. 15 1
871 257.15 atmosphere 1010.0 270 < th dose independent rect. 15 1
873 257.15 temperature 10.0 270 > th dose independent rect. 16 23
895 257.88 humidity 90.0 270 < th dose independent rect. 14 3
909 258.05 wind 1.0 270 > th dose independent rect. 15 1
912 258.09 atmosphere 1015.0 10 < th dose independent rect. 21 17
924 258.37 wind 9.0 270 < th dose independent rect. 15 1
935 258.68 radiation 40.0 270 < th dose independent rect. 15 1
952 259.32 humidity 50.0 270 > th dose independent rect. 8 16
970 259.74 temperature 10.0 90 > th dose dependent rect. 20 18
980 260.30 temperature 10.0 90 > th dose dependent rect. 14 6
998 261.21 temperature 10.0 10 > th dose dependent rect. 10 4