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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0871600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.37 (0.0661) R2 : 0.336
β1 : 0.457 (0.28) R2dD : 0.00574 R2D : 0.0209
β2 : 0.662 (0.169) R2dC : 0.0241 R2C : -0.0107
β3 : 2.05 (0.169) R2dE : 0.255 R2E : 0.179
β4 : 3.31 (0.799) R2dD*C : 0.0316 R2D*C : -0.00632
β5 : 3.97 (0.579) R2dD*E : 0.116 R2D*E : 0.0522
γ1 : -0.0488 (0.148) R2dN8 : 0.000249 R2N8 : 0.00312
σ : 1.21
deviance : 660.11
__
_____
C
peak time of C : 4.08
E
wheather : temperature
threshold : 21.47
memory length : 804
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.61
open length of G : 3.33

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
660.11 1.21 4.37 0.457 0.662 2.05 3.31 3.97 -0.0488 4.08 21.47 804 3.61 3.33
690.69 1.22 4.32 1.62 0.743 1.95 3.07 -- 0.294 5.47 21.63 1133 2.78 3.37
683.5 1.22 4.36 0.697 0.687 2.16 -- 3 0.00959 3.45 21.44 782 3.57 3.57
694.46 1.23 4.25 1.65 0.842 1.96 -- -- 0.348 5.64 21.62 1133 2.65 4.12
705.83 1.24 4.38 0.621 -- 1.96 -- 3.34 -0.0483 -- 21.4 750 3.08 4.02
890.85 1.4 4.39 0.868 0.73 -- 3.3 -- -0.354 8.13 -- -- -- --
923.16 1.42 4.39 0.968 0.725 -- -- -- -0.354 8.73 -- -- -- --
727.86 1.26 4.26 1.64 -- 1.94 -- -- 0.371 -- 21.63 1133 2.62 4.18
761.43 1.29 4.29 -- 0.814 1.83 -- -- 0.118 5.52 21.65 1106 2.73 4.42
952.9 1.44 4.41 0.969 -- -- -- -- -0.348 -- -- -- -- --
947.83 1.44 4.42 -- 0.728 -- -- -- -0.461 8.63 -- -- -- --
793.43 1.31 4.31 -- -- 1.69 -- -- 0.11 -- 21.63 1143 1.7 5.1
977.66 1.46 4.44 -- -- -- -- -- -0.455 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 662.31 wind 1 14400 < th dose dependent rect. 19 11
2 662.73 wind 1 14400 < th dose dependent rect. 21 9
9 668.53 wind 1 14400 < th dose dependent rect. 24 6
20 677.94 wind 1 14400 < th dose dependent rect. 4 2
21 678.23 humidity 50 43200 > th dose independent rect. 13 3
22 678.65 humidity 50 43200 > th dose independent rect. 11 6
26 679.42 radiation 40 43200 > th dose independent rect. 13 2
27 679.46 wind 1 14400 < th dose dependent sin 10 NA
28 679.65 radiation 40 43200 > th dose independent rect. 13 19
52 680.98 wind 1 14400 < th dose dependent rect. 3 4
58 681.40 humidity 50 43200 > th dose independent rect. 11 20
59 681.49 humidity 50 43200 > th dose independent rect. 11 18
66 681.72 humidity 50 43200 > th dose independent rect. 11 14
77 681.97 radiation 40 43200 > th dose independent sin 14 NA
113 682.95 wind 1 14400 < th dose independent rect. 21 9
124 683.50 humidity 50 43200 < th dose independent rect. 11 6
128 683.56 humidity 50 43200 > th dose independent rect. 19 22
132 683.62 humidity 50 43200 > th dose independent rect. 21 20
139 683.70 humidity 50 43200 > th dose independent rect. 24 17
141 683.71 humidity 50 43200 > th dose independent rect. 2 15
144 683.75 wind 1 14400 > th dose independent rect. 21 10
149 683.82 humidity 50 43200 > th dose independent rect. 6 11
175 684.90 humidity 50 43200 > th dose independent sin 22 NA
176 684.94 humidity 50 43200 < th dose independent rect. 11 20
179 685.01 humidity 50 43200 < th dose independent rect. 11 9
185 685.09 humidity 50 43200 < th dose independent rect. 11 11
214 685.75 temperature 25 720 < th dose dependent rect. 4 10
249 686.64 radiation 10 43200 < th dose dependent rect. 6 1
268 686.87 humidity 50 43200 > th dose independent rect. 6 23
270 686.90 humidity 50 43200 > th dose independent rect. 2 23
272 686.91 humidity 50 43200 > th dose independent no NA NA
275 686.91 humidity 50 43200 > th dose independent rect. 24 23
331 687.08 humidity 50 43200 > th dose independent rect. 6 19
395 687.57 wind 1 14400 > th dose independent rect. 20 14
397 687.76 wind 1 14400 < th dose independent rect. 20 15
405 687.93 humidity 50 43200 < th dose independent rect. 21 20
406 687.93 humidity 50 43200 < th dose independent rect. 19 22
407 687.94 humidity 50 43200 < th dose independent rect. 3 14
415 687.97 humidity 50 43200 < th dose independent rect. 6 11
431 688.42 humidity 50 43200 < th dose independent sin 21 NA
454 689.14 wind 1 14400 < th dose dependent rect. 2 10
456 689.22 radiation 30 43200 > th dose dependent rect. 13 3
501 689.47 radiation 10 43200 < th dose dependent rect. 24 8
506 689.51 radiation 10 43200 < th dose dependent rect. 21 11
510 689.53 radiation 10 43200 < th dose dependent rect. 2 6
525 689.60 radiation 10 43200 < th dose dependent sin 9 NA
526 689.60 radiation 10 43200 < th dose dependent rect. 18 15
532 689.70 humidity 50 43200 < th dose independent rect. 16 23
551 689.94 radiation 20 43200 < th dose independent rect. 15 1
559 689.98 radiation 10 43200 < th dose dependent rect. 17 17
567 690.02 wind 9 43200 > th dose independent rect. 11 1
573 690.05 humidity 50 43200 < th dose independent rect. 21 23
609 690.14 humidity 50 43200 < th dose independent no NA NA
638 690.17 humidity 50 43200 < th dose independent rect. 5 23
702 690.51 humidity 60 43200 < th dose independent rect. 8 2
707 690.58 wind 1 14400 > th dose independent sin 8 NA
772 690.95 wind 1 14400 < th dose independent sin 9 NA
802 691.06 radiation 20 43200 > th dose independent rect. 15 1
819 691.37 radiation 20 43200 > th dose dependent sin 15 NA
826 691.64 wind 1 14400 > th dose independent rect. 3 6
871 692.19 temperature 25 720 < th dose dependent sin 3 NA
882 692.39 wind 1 14400 < th dose dependent rect. 2 12
905 692.65 atmosphere 1015 43200 > th dose independent rect. 12 6
906 692.67 atmosphere 1015 43200 > th dose independent rect. 13 3
907 692.67 atmosphere 1015 43200 < th dose independent rect. 13 5
908 692.68 atmosphere 1015 43200 < th dose independent rect. 14 2
963 693.21 atmosphere 1015 43200 < th dose independent rect. 12 8
984 693.27 atmosphere 1015 43200 > th dose independent rect. 12 9