Os01g0871500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os01g0871500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.04 | 0.666 | 10.9 | -1.06 | 1.92 | -3.76 | 0.491 | -6.03 | -0.0681 | 17.8 | 20.2 | 336 | -- | -- |
| 208.8 | 0.673 | 10.9 | -1.15 | 1.99 | -1.41 | 0.874 | -- | -0.0969 | 17.9 | 21.5 | 331 | -- | -- |
| 201.44 | 0.661 | 10.9 | -1.05 | 1.92 | -3.55 | -- | -5.72 | -0.0686 | 17.8 | 20.4 | 341 | -- | -- |
| 211.02 | 0.677 | 10.9 | -1.14 | 1.96 | -1.39 | -- | -- | -0.0948 | 17.8 | 21.49 | 310 | -- | -- |
| 347.87 | 0.869 | 10.9 | -0.97 | -- | -2.28 | -- | -2.58 | -0.217 | -- | 31.13 | 368 | -- | -- |
| 224.6 | 0.703 | 10.9 | -0.848 | 2.04 | -- | 0.949 | -- | 0.0359 | 17.9 | -- | -- | -- | -- |
| 226.69 | 0.705 | 10.9 | -0.853 | 2.05 | -- | -- | -- | 0.0402 | 17.8 | -- | -- | -- | -- |
| 350.64 | 0.872 | 11 | -1.45 | -- | -2.39 | -- | -- | -0.406 | -- | 31.6 | 353 | -- | -- |
| 241.08 | 0.723 | 10.9 | -- | 2.01 | -0.726 | -- | -- | 0.0807 | 17.8 | 21.58 | 292 | -- | -- |
| 443.84 | 0.984 | 10.9 | -0.917 | -- | -- | -- | -- | -0.00802 | -- | -- | -- | -- | -- |
| 245.87 | 0.733 | 10.9 | -- | 2.06 | -- | -- | -- | 0.135 | 17.8 | -- | -- | -- | -- |
| 402.46 | 0.934 | 10.9 | -- | -- | -1.99 | -- | -- | -0.134 | -- | 39.3 | 353 | -- | -- |
| 466.01 | 1.01 | 10.8 | -- | -- | -- | -- | -- | 0.0937 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 181.19 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 3 | 181.78 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 10 | 182.97 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 13 | 183.26 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 47 | 185.18 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 56 | 185.67 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 57 | 185.72 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 75 | 186.77 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 101 | 187.48 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 114 | 187.73 | humidity | 80 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 115 | 187.74 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 264 | 190.69 | wind | 9 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 347 | 192.20 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 17 |
| 359 | 192.50 | humidity | 80 | 14400 | < th | dose independent | sin | 10 | NA |
| 373 | 192.72 | humidity | 80 | 14400 | > th | dose independent | sin | 10 | NA |
| 381 | 192.81 | wind | 9 | 14400 | > th | dose independent | sin | 3 | NA |
| 458 | 194.36 | wind | 9 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 521 | 195.72 | wind | 9 | 14400 | > th | dose dependent | sin | 3 | NA |
| 538 | 195.96 | wind | 9 | 14400 | < th | dose independent | sin | 3 | NA |
| 543 | 196.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 567 | 196.50 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 570 | 196.50 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 579 | 196.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 582 | 196.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 591 | 196.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 597 | 196.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 629 | 197.26 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 14 |
| 633 | 197.53 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 668 | 198.02 | atmosphere | 1000 | 10 | > th | dose independent | sin | 6 | NA |
| 685 | 198.07 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 17 | 17 |
| 692 | 198.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 702 | 198.29 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 720 | 198.45 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 751 | 198.50 | atmosphere | 1000 | 270 | > th | dose independent | sin | 12 | NA |
| 757 | 198.52 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 764 | 198.62 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 770 | 198.65 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 18 |
| 780 | 198.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 785 | 198.82 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 14 | 23 |
| 793 | 198.85 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 15 | 13 |
| 794 | 198.87 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 16 | 11 |
| 851 | 199.08 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 856 | 199.10 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 859 | 199.13 | atmosphere | 1000 | 10 | > th | dose independent | sin | 9 | NA |
| 879 | 199.21 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 889 | 199.25 | temperature | 20 | 720 | > th | dose independent | sin | 17 | NA |
| 909 | 199.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 11 |
| 925 | 199.36 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 935 | 199.41 | atmosphere | 1000 | 720 | > th | dose independent | sin | 15 | NA |
| 936 | 199.41 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 940 | 199.44 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 11 |
| 951 | 199.49 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 959 | 199.52 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 16 | 19 |
| 985 | 199.70 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 4 |