Os01g0870500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0870500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.03 | 0.361 | 11.1 | -0.116 | 0.79 | 1.16 | 0.583 | -3.83 | 0.582 | 4.83 | 31.4 | 1162 | -- | -- |
| 59.56 | 0.359 | 11 | 0.498 | 0.783 | 0.718 | 0.625 | -- | 0.572 | 4.76 | 31.61 | 1121 | -- | -- |
| 59.87 | 0.36 | 11.1 | -0.0912 | 0.793 | 1.16 | -- | -3.8 | 0.577 | 4.8 | 31.82 | 1135 | -- | -- |
| 60.34 | 0.362 | 11 | 0.49 | 0.789 | 0.731 | -- | -- | 0.577 | 4.8 | 31.65 | 1136 | -- | -- |
| 92.62 | 0.448 | 11 | 0.255 | -- | 0.989 | -- | -1.55 | 0.612 | -- | 31.46 | 1164 | -- | -- |
| 84.38 | 0.431 | 11 | 0.668 | 0.853 | -- | 0.693 | -- | 0.451 | 4.39 | -- | -- | -- | -- |
| 85.69 | 0.433 | 11 | 0.662 | 0.857 | -- | -- | -- | 0.447 | 4.37 | -- | -- | -- | -- |
| 92.66 | 0.448 | 11 | 0.492 | -- | 0.811 | -- | -- | 0.619 | -- | 31.3 | 1182 | -- | -- |
| 66.33 | 0.379 | 11 | -- | 0.792 | 0.784 | -- | -- | 0.542 | 4.8 | 31.2 | 1176 | -- | -- |
| 125.14 | 0.523 | 11 | 0.696 | -- | -- | -- | -- | 0.47 | -- | -- | -- | -- | -- |
| 97.23 | 0.461 | 11 | -- | 0.87 | -- | -- | -- | 0.374 | 4.36 | -- | -- | -- | -- |
| 98.78 | 0.463 | 11 | -- | -- | 0.87 | -- | -- | 0.572 | -- | 31.2 | 1193 | -- | -- |
| 137.9 | 0.548 | 11.1 | -- | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.32 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 2 | 56.56 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 20 | 57.22 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 22 | 57.53 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 25 | 57.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 28 | 57.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 32 | 57.89 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 34 | 57.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 35 | 57.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 42 | 58.11 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 44 | 58.19 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 45 | 58.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 50 | 58.26 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 51 | 58.27 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 60 | 58.34 | temperature | 25 | 14400 | > th | dose independent | sin | 8 | NA |
| 62 | 58.35 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 6 |
| 65 | 58.36 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 66 | 58.36 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 74 | 58.38 | temperature | 20 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 80 | 58.40 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 82 | 58.40 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 87 | 58.41 | temperature | 20 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 91 | 58.42 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 94 | 58.44 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 95 | 58.44 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 6 |
| 105 | 58.47 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 113 | 58.50 | temperature | 25 | 14400 | < th | dose independent | sin | 8 | NA |
| 117 | 58.51 | temperature | 25 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 141 | 58.55 | temperature | 20 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 143 | 58.56 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 146 | 58.56 | temperature | 20 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 164 | 58.59 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 169 | 58.59 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 217 | 58.66 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 222 | 58.66 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 245 | 58.69 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 252 | 58.71 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 287 | 58.77 | temperature | 20 | 43200 | > th | dose independent | sin | 21 | NA |
| 303 | 58.79 | temperature | 20 | 43200 | < th | dose independent | sin | 20 | NA |
| 304 | 58.79 | temperature | 25 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 311 | 58.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 11 |
| 323 | 58.80 | temperature | 25 | 43200 | < th | dose dependent | rect. | 10 | 7 |
| 439 | 58.92 | temperature | 25 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 452 | 58.94 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 19 |
| 455 | 58.94 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 7 |
| 488 | 58.98 | temperature | 25 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 490 | 58.99 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 520 | 59.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 541 | 59.02 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 549 | 59.02 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 15 |
| 591 | 59.06 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 613 | 59.08 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 631 | 59.09 | humidity | 90 | 43200 | > th | dose dependent | sin | 18 | NA |
| 647 | 59.10 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 19 |
| 660 | 59.11 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 666 | 59.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 710 | 59.14 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 15 |
| 720 | 59.16 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 730 | 59.16 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 750 | 59.17 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 767 | 59.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 871 | 59.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 901 | 59.27 | temperature | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 903 | 59.27 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 909 | 59.28 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 925 | 59.29 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 957 | 59.30 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 990 | 59.32 | temperature | 25 | 14400 | > th | dose dependent | sin | 14 | NA |
| 993 | 59.33 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 1000 | 59.33 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 22 |