Os01g0869600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAM, LAG1 and CLN8 homology domain containing protein.
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Os01g0869600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAM, LAG1 and CLN8 homology domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.28 | 0.232 | 12.7 | -0.998 | 0.548 | -0.211 | 0.249 | -0.777 | -0.549 | 3.93 | 0.6063 | 5431 | -- | -- |
| 23.74 | 0.227 | 12.6 | -0.901 | 0.544 | -0.419 | 0.238 | -- | -0.558 | 3.9 | 0.7644 | 12852 | -- | -- |
| 24.22 | 0.229 | 12.7 | -0.97 | 0.531 | -0.265 | -- | -0.469 | -0.557 | 3.98 | 0.7048 | 6916 | -- | -- |
| 23.8 | 0.227 | 12.7 | -0.891 | 0.541 | -0.419 | -- | -- | -0.559 | 4.07 | 0.7756 | 12914 | -- | -- |
| 39.47 | 0.293 | 12.7 | -0.935 | -- | -0.294 | -- | -0.67 | -0.541 | -- | 1.248 | 14577 | -- | -- |
| 29.04 | 0.253 | 12.6 | -1.09 | 0.539 | -- | 0.149 | -- | -0.516 | 4.03 | -- | -- | -- | -- |
| 29.1 | 0.253 | 12.6 | -1.09 | 0.541 | -- | -- | -- | -0.517 | 4.09 | -- | -- | -- | -- |
| 39.27 | 0.292 | 12.7 | -0.887 | -- | -0.337 | -- | -- | -0.538 | -- | 3 | 19810 | -- | -- |
| 37.82 | 0.286 | 12.6 | -- | 0.519 | -0.685 | -- | -- | -0.528 | 4.11 | 1.439 | 33124 | -- | -- |
| 45.01 | 0.313 | 12.6 | -1.07 | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
| 60.26 | 0.363 | 12.6 | -- | 0.52 | -- | -- | -- | -0.396 | 4.12 | -- | -- | -- | -- |
| 51.77 | 0.335 | 12.6 | -- | -- | -0.685 | -- | -- | -0.522 | -- | 1.441 | 33247 | -- | -- |
| 74.95 | 0.404 | 12.6 | -- | -- | -- | -- | -- | -0.385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 2 | 22.77 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 3 | 22.89 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 4 | 22.90 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 5 | 22.90 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 7 | 22.92 | wind | 1.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 8 | 22.95 | wind | 7.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 10 | 22.96 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 11 | 22.98 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 4 |
| 22 | 23.06 | wind | 7.0 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 26 | 23.09 | wind | 7.0 | 43200 | < th | dose independent | rect. | 12 | 9 |
| 34 | 23.10 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 44 | 23.13 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 76 | 23.18 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 85 | 23.20 | wind | 1.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 105 | 23.22 | wind | 9.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 106 | 23.22 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 138 | 23.26 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 146 | 23.26 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 150 | 23.27 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 151 | 23.27 | wind | 7.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 166 | 23.28 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 174 | 23.28 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 179 | 23.29 | wind | 7.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 189 | 23.30 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 206 | 23.31 | wind | 7.0 | 43200 | < th | dose independent | sin | 18 | NA |
| 240 | 23.33 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 14 | 17 |
| 254 | 23.35 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 260 | 23.35 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 269 | 23.36 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 301 | 23.37 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 14 |
| 311 | 23.38 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 321 | 23.38 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 14 |
| 323 | 23.38 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 16 |
| 410 | 23.43 | wind | 3.0 | 43200 | > th | dose dependent | sin | 21 | NA |
| 426 | 23.44 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 435 | 23.44 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 448 | 23.44 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 14 | 18 |
| 487 | 23.46 | wind | 7.0 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 496 | 23.46 | wind | 3.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 511 | 23.47 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 513 | 23.47 | wind | 7.0 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 613 | 23.50 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 618 | 23.50 | wind | 9.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 635 | 23.51 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 684 | 23.52 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 685 | 23.52 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 705 | 23.53 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 723 | 23.53 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 762 | 23.54 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 763 | 23.54 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 775 | 23.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 806 | 23.55 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 838 | 23.55 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 14 |
| 887 | 23.56 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 932 | 23.57 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 958 | 23.58 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 962 | 23.58 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 8 |