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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0869400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucuronosyl/UDP-glucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0406) R2 : 0.677
β1 : 3.35 (0.146) R2dD : 0.407 R2D : 0.254
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.51 (0.155) R2dE : 0.495 R2E : 0.228
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.923 (0.0953) R2dN8 : 0.114 R2N8 : -0.165
σ : 0.735
deviance : 248.81
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.743
memory length : 36886
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 15.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.61 0.709 3.32 1.03 0.413 -1.9 2.01 -6.22 0.138 12.5 2.758 37600 15 15
235.24 0.714 3.36 3.13 0.366 -3.59 2.54 -- 0.852 12.5 1.749 34800 15 15.3
240.92 0.723 3.33 1.03 0.281 -1.88 -- -6.18 0.119 12.1 2.65 37001 15 14.9
250.22 0.737 3.36 3.27 0.43 -3.45 -- -- 0.801 12.5 1.74 34779 15 15.3
244.54 0.728 3.33 1.08 -- -1.94 -- -6.14 0.164 -- 2.494 36911 15 14.9
514.42 1.06 3.49 2.74 0.515 -- 2.17 -- -0.0851 12.4 -- -- -- --
534.62 1.08 3.49 2.82 0.509 -- -- -- -0.0754 12.1 -- -- -- --
248.81 0.735 3.29 3.35 -- -3.51 -- -- 0.923 -- 1.743 36886 15 15.3
404.91 0.937 3.27 -- 0.0167 -3.31 -- -- 0.605 0.376 3.739 35518 15.1 15.3
550.93 1.1 3.5 2.81 -- -- -- -- -0.0828 -- -- -- -- --
744.61 1.28 3.56 -- 0.473 -- -- -- -0.39 11.8 -- -- -- --
358.36 0.882 3.27 -- -- -4.36 -- -- 0.576 -- 3.83 35575 14.6 15.2
758.7 1.29 3.57 -- -- -- -- -- -0.394 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 217.01 wind 1.0 14400 < th dose dependent rect. 22 5
4 219.55 radiation 1.0 43200 > th dose dependent rect. 17 1
18 221.59 radiation 20.0 43200 < th dose dependent rect. 17 12
23 221.75 radiation 40.0 43200 < th dose dependent rect. 17 8
33 221.85 radiation 20.0 43200 < th dose dependent rect. 17 2
69 222.69 precipitation 0.1 43200 > th dose independent rect. 23 1
70 222.69 precipitation 0.1 43200 > th dose dependent rect. 23 1
73 223.16 precipitation 0.1 43200 > th dose dependent rect. 17 3
75 223.47 precipitation 0.1 43200 < th dose independent rect. 23 1
76 223.47 precipitation 0.1 43200 < th dose dependent rect. 23 1
89 224.33 humidity 70.0 43200 > th dose independent rect. 14 5
92 224.43 humidity 70.0 43200 > th dose independent rect. 15 3
111 225.16 humidity 70.0 43200 > th dose independent rect. 13 7
133 225.26 humidity 70.0 43200 < th dose independent rect. 15 3
155 225.89 humidity 70.0 43200 < th dose independent rect. 12 8
162 226.32 radiation 10.0 43200 < th dose independent rect. 15 2
168 226.70 humidity 70.0 43200 < th dose independent rect. 16 1
189 227.82 humidity 80.0 43200 > th dose independent rect. 17 5
192 227.94 radiation 10.0 43200 < th dose dependent sin 14 NA
194 228.05 humidity 80.0 43200 < th dose independent rect. 17 5
195 228.08 humidity 80.0 43200 < th dose independent rect. 16 7
202 228.30 humidity 80.0 43200 > th dose independent rect. 18 1
215 228.65 radiation 10.0 43200 < th dose dependent rect. 13 17
219 228.81 radiation 1.0 43200 < th dose independent rect. 22 8
225 228.85 radiation 1.0 43200 < th dose independent rect. 3 3
230 228.89 humidity 70.0 43200 > th dose independent sin 20 NA
233 228.93 radiation 1.0 43200 > th dose independent rect. 4 2
278 229.77 humidity 80.0 43200 < th dose independent rect. 18 1
285 229.80 humidity 80.0 43200 < th dose independent rect. 17 3
349 231.09 humidity 70.0 43200 < th dose independent sin 20 NA
369 231.33 wind 1.0 14400 < th dose independent rect. 22 4
387 231.65 humidity 80.0 43200 > th dose dependent rect. 5 2
388 231.70 radiation 10.0 43200 < th dose dependent rect. 13 12
392 231.71 radiation 10.0 43200 < th dose dependent rect. 13 6
400 231.80 radiation 20.0 43200 < th dose independent rect. 13 1
439 232.28 precipitation 0.1 43200 > th dose dependent rect. 2 1
458 232.44 radiation 10.0 43200 < th dose independent rect. 13 12
465 232.46 radiation 10.0 43200 < th dose independent rect. 13 10
491 232.85 radiation 10.0 43200 < th dose independent rect. 15 10
492 232.85 radiation 10.0 43200 < th dose independent rect. 15 12
500 232.88 radiation 10.0 43200 < th dose independent rect. 15 8
543 233.14 precipitation 0.1 43200 > th dose independent rect. 2 2
558 233.26 wind 1.0 43200 < th dose independent rect. 22 2
559 233.26 precipitation 0.1 43200 < th dose independent rect. 2 2
560 233.26 precipitation 0.1 43200 < th dose dependent rect. 2 2
577 233.57 humidity 50.0 43200 > th dose dependent rect. 5 1
630 234.28 humidity 90.0 43200 < th dose independent rect. 6 1
666 234.50 wind 1.0 14400 > th dose independent rect. 22 4
683 234.65 humidity 90.0 43200 < th dose dependent rect. 18 3
714 234.94 wind 1.0 43200 > th dose independent rect. 22 1
717 234.97 humidity 60.0 43200 > th dose dependent rect. 18 3
733 235.14 humidity 70.0 43200 > th dose dependent rect. 20 1
771 235.48 radiation 10.0 43200 < th dose independent sin 17 NA
829 236.12 humidity 60.0 43200 > th dose dependent rect. 15 16
841 236.25 radiation 30.0 43200 < th dose independent rect. 15 1
883 236.55 humidity 90.0 43200 < th dose dependent rect. 20 1
966 236.95 humidity 60.0 43200 > th dose dependent rect. 14 10
973 236.97 humidity 60.0 43200 > th dose dependent sin 14 NA