Os01g0869000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF639 family protein.
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Os01g0869000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF639 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.33 | 0.287 | 11.1 | 0.664 | 0.915 | -1.32 | -0.363 | -0.955 | 0.373 | 18.7 | 23.63 | 952 | -- | -- |
| 38.5 | 0.289 | 11.1 | 0.539 | 0.918 | -1.17 | -0.355 | -- | 0.329 | 18.6 | 23.87 | 965 | -- | -- |
| 37.6 | 0.286 | 11.1 | 0.661 | 0.911 | -1.36 | -- | -0.988 | 0.374 | 18.6 | 23.41 | 967 | -- | -- |
| 38.61 | 0.289 | 11.1 | 0.529 | 0.916 | -1.17 | -- | -- | 0.335 | 18.6 | 24 | 945 | -- | -- |
| 60.29 | 0.362 | 11.1 | 0.465 | -- | -1.7 | -- | -0.0654 | 0.281 | -- | 32.42 | 505 | -- | -- |
| 57.08 | 0.354 | 11.1 | 0.854 | 0.957 | -- | -0.389 | -- | 0.562 | 19.2 | -- | -- | -- | -- |
| 57.47 | 0.355 | 11.1 | 0.863 | 0.957 | -- | -- | -- | 0.561 | 19.1 | -- | -- | -- | -- |
| 60.3 | 0.362 | 11.1 | 0.455 | -- | -1.7 | -- | -- | 0.275 | -- | 32.37 | 500 | -- | -- |
| 45.29 | 0.313 | 11.1 | -- | 0.958 | -1.4 | -- | -- | 0.287 | 18.6 | 23.75 | 960 | -- | -- |
| 105.81 | 0.481 | 11.1 | 0.844 | -- | -- | -- | -- | 0.544 | -- | -- | -- | -- | -- |
| 77.08 | 0.411 | 11.1 | -- | 0.948 | -- | -- | -- | 0.465 | 19.2 | -- | -- | -- | -- |
| 65.18 | 0.376 | 11.1 | -- | -- | -1.84 | -- | -- | 0.192 | -- | 31.69 | 509 | -- | -- |
| 124.62 | 0.521 | 11.1 | -- | -- | -- | -- | -- | 0.451 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 5 | 29.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 36 | 30.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 71 | 30.83 | temperature | 25 | 720 | < th | dose dependent | sin | 4 | NA |
| 81 | 31.02 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 329 | 34.05 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 13 |
| 417 | 34.86 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 484 | 35.52 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 8 |
| 487 | 35.53 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 7 |
| 489 | 35.55 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 492 | 35.57 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 5 |
| 504 | 35.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 14 |
| 539 | 35.86 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 545 | 35.89 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 10 |
| 615 | 36.28 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 6 |
| 636 | 36.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 655 | 36.49 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 777 | 37.01 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 817 | 37.15 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 11 |
| 872 | 37.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 924 | 37.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 978 | 37.76 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |