Os01g0868600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0868600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.16 | 0.283 | 2.84 | -0.252 | 0.24 | -0.242 | -1.05 | 1.23 | -0.0488 | 7.6 | 83 | 715 | -- | -- |
| 38.45 | 0.289 | 2.84 | -0.162 | 0.238 | -0.216 | -0.596 | -- | -0.0391 | 7 | 84.85 | 589 | -- | -- |
| 37.69 | 0.286 | 2.85 | -0.31 | 0.132 | -0.252 | -- | 1.26 | -0.0487 | 7.6 | 73 | 1311 | -- | -- |
| 38.97 | 0.291 | 2.85 | -0.155 | 0.266 | -0.27 | -- | -- | -0.0459 | 7.68 | 85.45 | 620 | -- | -- |
| 38.66 | 0.29 | 2.85 | -0.308 | -- | -0.257 | -- | 1.33 | -0.0454 | -- | 73 | 1330 | -- | -- |
| 39.43 | 0.294 | 2.84 | -0.174 | 0.138 | -- | -0.602 | -- | -0.00114 | 6.61 | -- | -- | -- | -- |
| 40.26 | 0.297 | 2.84 | -0.182 | 0.14 | -- | -- | -- | 0.00129 | 7.6 | -- | -- | -- | -- |
| 40.65 | 0.297 | 2.85 | -0.158 | -- | -0.206 | -- | -- | -0.0254 | -- | 83 | 1361 | -- | -- |
| 39.57 | 0.293 | 2.84 | -- | 0.279 | -0.308 | -- | -- | -0.0288 | 7.91 | 85.06 | 634 | -- | -- |
| 41.31 | 0.3 | 2.84 | -0.18 | -- | -- | -- | -- | 0.0034 | -- | -- | -- | -- | -- |
| 41.13 | 0.3 | 2.83 | -- | 0.138 | -- | -- | -- | 0.0215 | 7.69 | -- | -- | -- | -- |
| 41.27 | 0.299 | 2.85 | -- | -- | -0.238 | -- | -- | -0.0135 | -- | 83 | 1378 | -- | -- |
| 42.16 | 0.303 | 2.84 | -- | -- | -- | -- | -- | 0.0233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.51 | humidity | 90 | 10 | < th | dose dependent | rect. | 1 | 7 |
| 3 | 26.89 | humidity | 80 | 90 | < th | dose independent | rect. | 1 | 6 |
| 6 | 27.03 | humidity | 70 | 90 | < th | dose independent | rect. | 6 | 3 |
| 33 | 27.40 | humidity | 80 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 37 | 27.41 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 97 | 27.41 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 164 | 27.42 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 182 | 27.42 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 183 | 27.42 | radiation | 30 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 582 | 28.69 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 598 | 28.75 | humidity | 80 | 720 | < th | dose independent | rect. | 1 | 1 |
| 602 | 28.75 | humidity | 80 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 638 | 28.85 | humidity | 80 | 720 | < th | dose dependent | rect. | 21 | 11 |
| 679 | 29.17 | radiation | 30 | 30 | < th | dose independent | sin | 11 | NA |
| 709 | 29.57 | humidity | 70 | 10 | < th | dose independent | sin | 10 | NA |
| 715 | 29.61 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 717 | 29.63 | humidity | 80 | 720 | < th | dose independent | rect. | 1 | 6 |
| 724 | 29.67 | humidity | 70 | 720 | < th | dose independent | rect. | 7 | 1 |
| 742 | 29.68 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 813 | 29.70 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 1 |