Os01g0868300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA polymerase alpha catalytic subunit (EC 2.7.7.7).
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Os01g0868300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA polymerase alpha catalytic subunit (EC 2.7.7.7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.92 | 0.544 | 5.16 | 0.16 | 0.78 | 1.57 | -0.51 | 4.32 | -0.139 | 0.854 | 1.038 | 4323 | -- | -- |
| 153.54 | 0.577 | 5.05 | 0.589 | 0.835 | 0.666 | -0.587 | -- | 0.0476 | 0.713 | 12.49 | 8508 | -- | -- |
| 134.7 | 0.541 | 5.15 | 0.173 | 0.834 | 1.55 | -- | 4.29 | -0.133 | 0.672 | 1.11 | 4300 | -- | -- |
| 147.54 | 0.566 | 5.07 | 1.05 | 0.977 | 1.33 | -- | -- | 0.116 | 0.615 | 3.156 | 4200 | -- | -- |
| 154.31 | 0.579 | 5.11 | 0.188 | -- | 1.76 | -- | 4.32 | -0.0947 | -- | 1.781 | 4514 | -- | -- |
| 163.32 | 0.599 | 5.1 | 0.703 | 0.747 | -- | -0.586 | -- | -0.182 | 0.781 | -- | -- | -- | -- |
| 164.71 | 0.601 | 5.1 | 0.725 | 0.748 | -- | -- | -- | -0.178 | 0.601 | -- | -- | -- | -- |
| 156.36 | 0.582 | 5.02 | 0.99 | -- | 1.49 | -- | -- | 0.106 | -- | 3.576 | 4595 | -- | -- |
| 163.25 | 0.595 | 5.08 | -- | 0.955 | 0.985 | -- | -- | -0.0597 | 0.219 | 7.192 | 4175 | -- | -- |
| 199.74 | 0.66 | 5.08 | 0.752 | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
| 178.58 | 0.625 | 5.11 | -- | 0.759 | -- | -- | -- | -0.259 | 0.647 | -- | -- | -- | -- |
| 177.27 | 0.62 | 5.05 | -- | -- | 1.42 | -- | -- | -0.0178 | -- | 6.18 | 4628 | -- | -- |
| 214.64 | 0.684 | 5.1 | -- | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.37 | radiation | 30 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 2 | 132.59 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 3 | 132.62 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 4 | 132.69 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 14 |
| 7 | 132.74 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 20 |
| 12 | 133.01 | radiation | 1 | 4320 | > th | dose independent | sin | 11 | NA |
| 13 | 133.04 | radiation | 1 | 4320 | < th | dose dependent | sin | 10 | NA |
| 14 | 133.07 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 20 | 133.11 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 22 | 133.14 | radiation | 20 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 25 | 133.18 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 20 |
| 29 | 133.22 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 38 | 133.26 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 42 | 133.29 | radiation | 1 | 4320 | < th | dose independent | sin | 11 | NA |
| 50 | 133.40 | radiation | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 66 | 133.42 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 67 | 133.43 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 84 | 133.61 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 16 |
| 96 | 133.68 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 22 |
| 99 | 133.69 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 20 |
| 101 | 133.70 | radiation | 10 | 14400 | < th | dose dependent | rect. | 17 | 8 |
| 105 | 133.71 | radiation | 10 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 120 | 133.73 | radiation | 20 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 121 | 133.73 | radiation | 10 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 124 | 133.73 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 153 | 133.75 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 14 |
| 168 | 133.77 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 11 |
| 177 | 133.78 | radiation | 1 | 4320 | > th | dose independent | rect. | 12 | 19 |
| 183 | 133.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 7 |
| 190 | 133.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 9 |
| 273 | 133.89 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 14 |
| 300 | 133.90 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 10 |
| 315 | 133.91 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 337 | 133.92 | radiation | 1 | 4320 | > th | dose independent | no | NA | NA |
| 338 | 133.92 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 394 | 133.93 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 411 | 133.94 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 22 |
| 423 | 133.95 | radiation | 1 | 4320 | < th | dose dependent | rect. | 24 | 23 |
| 430 | 133.96 | radiation | 1 | 4320 | < th | dose dependent | no | NA | NA |
| 437 | 133.96 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 440 | 133.96 | radiation | 1 | 4320 | < th | dose dependent | rect. | 20 | 23 |
| 479 | 134.00 | radiation | 1 | 4320 | < th | dose dependent | rect. | 24 | 20 |
| 487 | 134.01 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 19 |
| 530 | 134.06 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 15 |
| 542 | 134.07 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 17 |
| 566 | 134.10 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 802 | 134.36 | radiation | 1 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 837 | 134.41 | radiation | 1 | 4320 | < th | dose independent | rect. | 12 | 22 |
| 865 | 134.45 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 868 | 134.45 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 20 |
| 870 | 134.45 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 22 |
| 883 | 134.47 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 18 |
| 901 | 134.49 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 14 |
| 907 | 134.49 | radiation | 1 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 923 | 134.51 | radiation | 1 | 4320 | < th | dose independent | no | NA | NA |
| 926 | 134.51 | radiation | 1 | 4320 | < th | dose independent | rect. | 24 | 20 |
| 927 | 134.51 | radiation | 1 | 4320 | < th | dose independent | rect. | 22 | 21 |
| 971 | 134.54 | radiation | 1 | 4320 | < th | dose independent | rect. | 2 | 17 |