Os01g0868200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, DHHC-type domain containing protein.
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Os01g0868200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, DHHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.2 | 0.279 | 7.29 | 1.59 | 0.0161 | -1.34 | -0.851 | 1.13 | 0.453 | 6.03 | -1.503 | 901 | -- | -- |
| 36.08 | 0.28 | 7.32 | 1.37 | 0.0634 | -1.3 | -0.919 | -- | 0.395 | 6.94 | 12.29 | 938 | -- | -- |
| 36.51 | 0.281 | 7.29 | 1.58 | 0.105 | -1.25 | -- | 1.28 | 0.448 | 10.4 | 9.896 | 927 | -- | -- |
| 37.85 | 0.287 | 7.32 | 1.35 | 0.116 | -1.23 | -- | -- | 0.39 | 9.84 | 13.09 | 969 | -- | -- |
| 36.94 | 0.283 | 7.29 | 1.61 | -- | -1.34 | -- | 1.33 | 0.465 | -- | 12.68 | 885 | -- | -- |
| 59.26 | 0.361 | 7.36 | 1.01 | 0.329 | -- | -0.335 | -- | 0.188 | 10.2 | -- | -- | -- | -- |
| 59.64 | 0.362 | 7.36 | 1 | 0.33 | -- | -- | -- | 0.188 | 10.6 | -- | -- | -- | -- |
| 38.39 | 0.289 | 7.32 | 1.36 | -- | -1.32 | -- | -- | 0.398 | -- | 7.689 | 907 | -- | -- |
| 75.01 | 0.403 | 7.39 | -- | 0.261 | -0.533 | -- | -- | 0.0552 | 8.88 | 28.06 | 1143 | -- | -- |
| 66.33 | 0.381 | 7.37 | 0.997 | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
| 86.15 | 0.434 | 7.38 | -- | 0.323 | -- | -- | -- | 0.0761 | 10.4 | -- | -- | -- | -- |
| 77.63 | 0.41 | 7.4 | -- | -- | -0.629 | -- | -- | 0.0272 | -- | 27.7 | 1020 | -- | -- |
| 92.54 | 0.449 | 7.39 | -- | -- | -- | -- | -- | 0.0756 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 23 | 34.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 43 | 34.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 22 |
| 90 | 34.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 98 | 34.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 174 | 34.96 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 311 | 35.28 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 347 | 35.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 391 | 35.50 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 400 | 35.52 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 22 |
| 427 | 35.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 474 | 35.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 490 | 35.68 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 500 | 35.69 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 506 | 35.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 532 | 35.75 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 555 | 35.78 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 584 | 35.82 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 619 | 35.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 620 | 35.87 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 629 | 35.87 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 18 |
| 636 | 35.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 650 | 35.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 16 |
| 660 | 35.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 667 | 35.92 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 17 |
| 765 | 36.04 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 780 | 36.05 | wind | 5 | 43200 | > th | dose dependent | sin | 15 | NA |
| 783 | 36.05 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 790 | 36.06 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 807 | 36.07 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 815 | 36.07 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 817 | 36.08 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 837 | 36.09 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 849 | 36.09 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 861 | 36.11 | wind | 5 | 43200 | < th | dose independent | rect. | 1 | 20 |
| 864 | 36.11 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 959 | 36.16 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 18 |