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Os01g0866700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Sm-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0122) R2 : 0.000328
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00993 (0.0257) R2dN8 : 0.000423 R2N8 : 0.000328
σ : 0.23
deviance : 24.24
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.46 0.191 12.2 -0.0556 0.22 0.444 0.188 -0.219 -0.0607 14.2 50.07 4402 -- --
16.46 0.189 12.3 -0.0934 0.232 0.489 0.191 -- -0.0619 14.3 51 4622 -- --
16.58 0.19 12.2 -0.0477 0.222 0.45 -- -0.22 -0.06 14.5 50.17 4405 -- --
16.57 0.19 12.3 -0.0952 0.232 0.517 -- -- -0.0663 14.5 51 4657 -- --
19.21 0.204 12.3 -0.0767 -- 0.454 -- -0.0643 -0.069 -- 51.73 4035 -- --
19.18 0.205 12.2 -0.228 0.239 -- 0.244 -- -0.0114 14.1 -- -- -- --
19.38 0.206 12.2 -0.22 0.242 -- -- -- -0.00972 14.3 -- -- -- --
19.19 0.204 12.3 -0.079 -- 0.438 -- -- -0.0761 -- 51.53 4035 -- --
16.7 0.19 12.2 -- 0.225 0.411 -- -- -0.0525 14.5 50.62 4415 -- --
22.84 0.223 12.2 -0.23 -- -- -- -- -0.0156 -- -- -- -- --
20.66 0.213 12.2 -- 0.246 -- -- -- 0.0148 14.4 -- -- -- --
19.33 0.205 12.3 -- -- 0.471 -- -- -0.075 -- 51.5 4035 -- --
24.24 0.23 12.2 -- -- -- -- -- 0.00993 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.52 wind 1.0 14400 > th dose independent rect. 20 2
2 14.64 wind 1.0 14400 < th dose independent rect. 20 2
3 14.70 wind 1.0 14400 < th dose dependent rect. 20 2
16 15.40 temperature 20.0 270 > th dose independent rect. 14 15
20 15.44 precipitation 0.1 14400 > th dose independent rect. 8 1
21 15.44 precipitation 0.1 14400 > th dose dependent rect. 8 1
23 15.56 wind 1.0 14400 < th dose independent rect. 23 1
28 15.57 temperature 10.0 270 > th dose dependent rect. 5 9
29 15.58 precipitation 0.1 14400 < th dose independent rect. 8 1
30 15.58 precipitation 0.1 14400 < th dose dependent rect. 8 1
33 15.70 temperature 20.0 4320 > th dose independent rect. 20 1
34 15.70 humidity 70.0 270 > th dose dependent rect. 23 7
35 15.71 radiation 20.0 43200 > th dose independent rect. 10 1
36 15.71 precipitation 0.1 43200 > th dose dependent rect. 20 1
37 15.73 temperature 20.0 4320 < th dose independent rect. 19 3
39 15.73 temperature 20.0 270 > th dose independent rect. 5 9
45 15.76 temperature 20.0 4320 > th dose independent rect. 18 4
51 15.80 humidity 80.0 270 > th dose independent rect. 24 6
52 15.80 humidity 50.0 270 > th dose independent rect. 5 9
60 15.82 wind 7.0 43200 > th dose independent rect. 3 12
64 15.83 wind 7.0 43200 < th dose independent rect. 3 12
67 15.83 wind 9.0 43200 > th dose independent rect. 21 21
84 15.86 wind 9.0 43200 < th dose independent rect. 21 21
87 15.87 wind 9.0 43200 > th dose independent rect. 1 17
94 15.88 wind 9.0 43200 > th dose independent rect. 3 15
95 15.88 wind 9.0 43200 < th dose independent rect. 3 15
105 15.89 radiation 40.0 43200 < th dose independent rect. 10 1
111 15.89 radiation 30.0 43200 < th dose dependent rect. 10 1
122 15.91 wind 9.0 14400 > th dose independent rect. 20 16
132 15.92 precipitation 0.1 14400 > th dose independent rect. 6 1
144 15.92 precipitation 0.1 14400 > th dose dependent rect. 6 1
146 15.92 wind 7.0 43200 > th dose dependent rect. 21 18
147 15.93 wind 9.0 43200 > th dose independent sin 3 NA
148 15.93 radiation 40.0 43200 > th dose independent rect. 10 1
159 15.93 humidity 50.0 4320 > th dose independent rect. 15 19
164 15.94 precipitation 0.1 14400 < th dose independent rect. 6 1
174 15.94 precipitation 0.1 14400 < th dose dependent rect. 6 1
178 15.95 humidity 50.0 4320 > th dose independent rect. 15 2
189 15.95 precipitation 0.1 43200 > th dose dependent rect. 14 4
190 15.95 wind 9.0 14400 > th dose dependent rect. 20 16
193 15.96 wind 9.0 43200 < th dose independent sin 3 NA
201 15.96 wind 9.0 14400 < th dose independent rect. 20 16
207 15.96 wind 7.0 43200 > th dose dependent rect. 1 14
211 15.97 humidity 50.0 4320 > th dose independent sin 12 NA
212 15.97 precipitation 0.1 43200 > th dose independent rect. 20 1
213 15.97 precipitation 0.1 14400 > th dose independent rect. 8 3
217 15.97 wind 9.0 270 < th dose independent rect. 14 15
222 15.97 precipitation 0.1 14400 > th dose dependent rect. 8 3
223 15.97 wind 7.0 43200 > th dose dependent rect. 10 4
225 15.97 wind 7.0 43200 > th dose dependent rect. 3 12
230 15.98 precipitation 0.1 43200 < th dose independent rect. 20 1
235 15.98 temperature 20.0 270 > th dose independent rect. 23 20
236 15.98 wind 9.0 43200 > th dose independent rect. 19 23
237 15.98 precipitation 0.1 43200 < th dose dependent rect. 20 1
254 15.99 wind 9.0 43200 > th dose independent rect. 15 22
256 15.99 wind 9.0 43200 < th dose independent rect. 10 22
257 15.99 wind 9.0 43200 > th dose independent rect. 9 23
259 15.99 wind 9.0 43200 < th dose independent rect. 15 23
270 16.00 wind 7.0 43200 > th dose independent rect. 9 5
279 16.00 humidity 90.0 30 < th dose independent rect. 21 18
280 16.00 wind 9.0 43200 < th dose independent rect. 3 20
285 16.00 wind 9.0 43200 < th dose independent rect. 1 22
291 16.00 wind 9.0 43200 > th dose dependent rect. 10 8
296 16.01 wind 9.0 43200 > th dose independent no NA NA
302 16.01 wind 9.0 270 < th dose independent rect. 5 9
303 16.01 precipitation 0.1 270 < th dose independent rect. 5 9
316 16.01 humidity 50.0 4320 < th dose independent rect. 15 20
324 16.01 wind 9.0 43200 > th dose independent rect. 1 23
325 16.01 wind 9.0 43200 > th dose independent rect. 3 23
328 16.01 wind 9.0 43200 < th dose independent rect. 19 23
331 16.01 precipitation 0.1 270 < th dose dependent rect. 5 9
334 16.02 wind 9.0 43200 < th dose independent no NA NA
339 16.02 atmosphere 995.0 43200 > th dose independent rect. 16 6
353 16.02 wind 9.0 43200 > th dose independent rect. 3 20
361 16.02 wind 9.0 43200 < th dose independent rect. 15 21
384 16.02 wind 7.0 43200 > th dose dependent sin 4 NA
389 16.03 wind 9.0 43200 > th dose independent rect. 11 1
390 16.03 humidity 90.0 14400 > th dose independent rect. 10 1
391 16.03 radiation 20.0 43200 < th dose independent rect. 10 1
422 16.03 wind 9.0 14400 < th dose independent rect. 18 18
447 16.04 wind 7.0 43200 < th dose independent rect. 9 5
475 16.04 wind 9.0 43200 < th dose independent rect. 13 23
486 16.05 atmosphere 995.0 43200 < th dose independent rect. 16 6
489 16.05 atmosphere 995.0 270 > th dose independent rect. 5 9
490 16.05 atmosphere 1015.0 270 < th dose independent rect. 5 9
497 16.05 temperature 10.0 270 > th dose independent rect. 14 15
517 16.05 wind 9.0 14400 > th dose dependent sin 9 NA
519 16.05 wind 7.0 43200 > th dose dependent rect. 11 1
520 16.05 precipitation 0.1 43200 > th dose dependent rect. 12 6
522 16.05 wind 9.0 43200 > th dose dependent rect. 10 10
526 16.06 humidity 50.0 4320 < th dose independent sin 11 NA
553 16.06 radiation 10.0 43200 < th dose dependent rect. 12 1
554 16.06 atmosphere 995.0 43200 < th dose dependent rect. 16 6
560 16.07 wind 9.0 14400 > th dose independent sin 9 NA
564 16.07 wind 9.0 43200 < th dose independent rect. 11 1
568 16.07 wind 7.0 43200 < th dose independent rect. 7 7
577 16.07 humidity 90.0 90 < th dose independent rect. 3 12
589 16.07 radiation 1.0 270 < th dose dependent rect. 24 18
619 16.08 temperature 10.0 10 > th dose dependent rect. 6 9
620 16.08 wind 9.0 43200 > th dose dependent rect. 10 20
644 16.09 temperature 25.0 14400 < th dose dependent rect. 10 1
647 16.09 temperature 20.0 1440 > th dose dependent rect. 8 3
662 16.10 wind 9.0 14400 < th dose independent rect. 18 14
724 16.11 wind 9.0 14400 > th dose dependent rect. 14 21
727 16.12 wind 9.0 14400 < th dose independent sin 9 NA
728 16.12 wind 1.0 14400 > th dose independent rect. 23 1
736 16.12 wind 9.0 43200 < th dose independent rect. 15 17
751 16.12 temperature 30.0 1440 < th dose dependent rect. 8 1
764 16.12 wind 7.0 43200 > th dose dependent rect. 16 22
771 16.13 radiation 40.0 43200 < th dose independent rect. 16 6
820 16.14 radiation 40.0 43200 < th dose independent rect. 16 15
823 16.14 wind 9.0 43200 < th dose independent rect. 8 16
843 16.14 wind 9.0 43200 > th dose dependent rect. 14 3
848 16.14 radiation 1.0 270 < th dose dependent rect. 24 11
884 16.15 temperature 25.0 14400 < th dose dependent rect. 21 1
891 16.15 wind 9.0 14400 > th dose dependent rect. 14 18
895 16.15 humidity 80.0 30 > th dose dependent rect. 24 21
916 16.16 wind 9.0 43200 > th dose independent rect. 14 18
929 16.16 wind 5.0 14400 > th dose dependent rect. 6 1
940 16.16 humidity 80.0 10 > th dose dependent rect. 2 18
941 16.16 humidity 60.0 4320 < th dose dependent rect. 15 19
949 16.17 humidity 90.0 14400 < th dose independent rect. 10 1
965 16.17 radiation 1.0 270 < th dose independent rect. 24 17
967 16.17 temperature 15.0 270 > th dose independent rect. 6 18
971 16.17 humidity 90.0 90 > th dose independent rect. 1 19